Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   L2Z14_RS09555 Genome accession   NZ_CP091360
Coordinates   1988561..1988941 (+) Length   126 a.a.
NCBI ID   WP_000836909.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1983561..1993941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS09525 (L2Z14_09525) kdsB 1984464..1985225 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2Z14_RS09530 (L2Z14_09530) - 1985237..1986217 (+) 981 WP_001075419.1 DNA polymerase III subunit delta' -
  L2Z14_RS09535 (L2Z14_09535) - 1986229..1986570 (+) 342 WP_049581987.1 PilZ domain-containing protein -
  L2Z14_RS09540 (L2Z14_09540) - 1986588..1987361 (+) 774 WP_000497301.1 TatD family hydrolase -
  L2Z14_RS09545 (L2Z14_09545) - 1987399..1988007 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  L2Z14_RS09550 (L2Z14_09550) - 1988017..1988571 (+) 555 WP_000841372.1 type II secretion system protein -
  L2Z14_RS09555 (L2Z14_09555) xcpV 1988561..1988941 (+) 381 WP_000836909.1 type II secretion system minor pseudopilin GspI Machinery gene
  L2Z14_RS09560 (L2Z14_09560) xcpW 1988941..1989642 (+) 702 WP_000594588.1 type II secretion system minor pseudopilin GspJ Machinery gene
  L2Z14_RS09565 (L2Z14_09565) gspK 1989642..1990601 (+) 960 WP_001218621.1 type II secretion system minor pseudopilin GspK -
  L2Z14_RS09570 (L2Z14_09570) - 1990831..1991427 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  L2Z14_RS09575 (L2Z14_09575) ung 1991478..1992191 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  L2Z14_RS09580 (L2Z14_09580) - 1992188..1993312 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  L2Z14_RS09585 (L2Z14_09585) tadA 1993319..1993822 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13991.24 Da        Isoelectric Point: 9.8004

>NTDB_id=650322 L2Z14_RS09555 WP_000836909.1 1988561..1988941(+) (xcpV) [Acinetobacter baumannii strain AB179-VUB]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=650322 L2Z14_RS09555 WP_000836909.1 1988561..1988941(+) (xcpV) [Acinetobacter baumannii strain AB179-VUB]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992