Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z22_RS15315 Genome accession   NZ_CP091353
Coordinates   3156646..3157464 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB189-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3151646..3162464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z22_RS15300 (L2Z22_15295) pilE 3151863..3152288 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L2Z22_RS15305 (L2Z22_15300) pilY2 3152285..3152767 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  L2Z22_RS15310 (L2Z22_15305) pilY1 3152780..3156634 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z22_RS15315 (L2Z22_15310) pilX 3156646..3157464 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z22_RS15320 (L2Z22_15315) pilW 3157461..3158462 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z22_RS15325 (L2Z22_15320) pilV 3158463..3159023 (-) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  L2Z22_RS15330 (L2Z22_15325) fimU 3159017..3159490 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2Z22_RS15335 (L2Z22_15330) ispH 3159660..3160610 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z22_RS15340 (L2Z22_15335) gmk 3160733..3161362 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z22_RS15345 (L2Z22_15340) rpoZ 3161435..3161713 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z22_RS15350 (L2Z22_15345) - 3161752..3161882 (+) 131 Protein_3004 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=650126 L2Z22_RS15315 WP_000149374.1 3156646..3157464(-) (pilX) [Acinetobacter baumannii strain AB189-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=650126 L2Z22_RS15315 WP_000149374.1 3156646..3157464(-) (pilX) [Acinetobacter baumannii strain AB189-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993