Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   L2Z43_RS10235 Genome accession   NZ_CP091334
Coordinates   2170753..2171280 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain ATCC19606-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2165753..2176280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z43_RS10215 (L2Z43_10215) - 2165942..2166817 (-) 876 WP_000218797.1 hypothetical protein -
  L2Z43_RS10220 (L2Z43_10220) aroB 2166833..2167915 (-) 1083 WP_001194003.1 3-dehydroquinate synthase -
  L2Z43_RS10225 (L2Z43_10225) aroK 2167944..2168513 (-) 570 WP_000643712.1 shikimate kinase AroK -
  L2Z43_RS10230 (L2Z43_10230) pilQ 2168525..2170690 (-) 2166 WP_001017037.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z43_RS10235 (L2Z43_10235) pilP 2170753..2171280 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  L2Z43_RS10240 (L2Z43_10240) pilO 2171291..2172031 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z43_RS10245 (L2Z43_10245) - 2172028..2172669 (-) 642 Protein_2005 PilN domain-containing protein -
  L2Z43_RS10250 (L2Z43_10250) pilM 2172669..2173727 (-) 1059 WP_005143496.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=649324 L2Z43_RS10235 WP_000695065.1 2170753..2171280(-) (pilP) [Acinetobacter baumannii strain ATCC19606-VUB]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=649324 L2Z43_RS10235 WP_000695065.1 2170753..2171280(-) (pilP) [Acinetobacter baumannii strain ATCC19606-VUB]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTGGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714