Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG370_RS14620 Genome accession   NZ_CP107913
Coordinates   3465132..3467354 (-) Length   740 a.a.
NCBI ID   WP_328464328.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3460132..3472354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recD/recD2/recDB 3465132..3467354 (-) 2223 - - Machinery gene

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79655.19 Da        Isoelectric Point: 6.8337

>NTDB_id=648862 OG370_RS14620 WP_328464328.1 3465132..3467354(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00448]
MGEAPHFSVLEGVLERITYANEDNGYTVARVDTGRGAGDLLTVVGALLGAQPGESLRMHGRWGSHPQYGKQFTVENYTTV
LPATIQGIRRYLGSGLIKGIGPRIAERIVDHFGTDTLEVIETEATRLVEVPGLGPKRTKLIAVAWEEQKAIKEVMVFLQG
VGVSTSIAVRIYKSYGDASISVVKNQPYRLASEVWGIGFLTADRLAQAVGIPHDSPERIKAGLQYALSQATDGGNCFLPE
ERLIADAVKLLQVDIGLVIECLGELADEEGVVRERVPSPDGDGEPIKAVYLVPFHRAEIALAAQVLRLLRGPEDRMPAFQ
DVAWDKALAWLADKTGADLAPEQQEAVRLALTQKVAVLTGGPGCGKSFTVRSVVALATAKKAKVVLAAPTGRAAKRLAEL
TGAAASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDL
LTPGGPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPVTQGLADFFLFAEEDSEEAARLTVDVVARRIPARFGLDPRRDV
QVLTPMHRGPAGAGVLNGLLQQAVTPARPDVAERRFGGRTFRVGDKVTQIRNNYDKGANGVFNGTVGVVTSLDVVEQRLT
VRTDEDEEIGYDFDELDELTHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRAIGQAVR
TVSAGRRFTALDHRLDLGAK

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=648862 OG370_RS14620 WP_328464328.1 3465132..3467354(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00448]
ATGGGTGAGGCGCCGCACTTTTCGGTCCTGGAGGGCGTCCTCGAGCGGATCACGTACGCCAACGAGGACAACGGCTACAC
GGTCGCGCGCGTCGACACCGGCCGCGGTGCCGGCGATCTCCTCACGGTGGTCGGTGCCCTGCTCGGTGCACAGCCCGGCG
AGTCCCTGCGGATGCACGGCCGTTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACGACGGTC
CTGCCGGCCACGATCCAGGGCATCCGCCGCTACCTCGGCTCGGGGCTGATCAAGGGGATCGGGCCGCGCATCGCCGAGCG
CATCGTGGATCACTTCGGTACCGACACCCTGGAGGTCATCGAGACCGAGGCCACCCGCCTGGTCGAGGTGCCGGGACTCG
GGCCGAAGCGGACGAAGTTGATCGCCGTCGCGTGGGAGGAACAGAAGGCGATCAAGGAGGTGATGGTGTTCCTCCAGGGC
GTGGGGGTGTCCACGTCGATCGCCGTGCGGATCTACAAGAGTTACGGCGACGCCTCGATCTCCGTGGTGAAGAACCAGCC
GTATCGTCTTGCCTCCGAGGTGTGGGGCATCGGGTTCCTGACCGCGGACCGGCTCGCCCAGGCGGTGGGCATCCCGCACG
ACAGCCCTGAGCGGATCAAGGCCGGTCTTCAGTACGCCCTTTCGCAGGCCACCGACGGCGGCAACTGCTTCCTGCCCGAG
GAGCGGCTGATAGCCGATGCGGTGAAGCTGCTCCAGGTGGACATCGGCTTGGTGATCGAGTGCCTGGGGGAGTTGGCCGA
CGAGGAGGGGGTGGTGCGTGAGCGCGTGCCGTCGCCCGACGGCGACGGCGAACCGATCAAAGCGGTGTACCTGGTGCCGT
TCCATCGCGCGGAGATAGCGCTCGCCGCCCAGGTGCTGCGGCTGCTGCGCGGCCCGGAGGACCGTATGCCGGCCTTCCAG
GACGTGGCCTGGGACAAGGCGCTGGCCTGGCTCGCTGACAAGACCGGCGCGGACCTCGCCCCCGAGCAGCAGGAAGCGGT
GCGGCTGGCGCTCACGCAGAAAGTGGCGGTGCTCACCGGCGGTCCGGGCTGCGGCAAGTCGTTCACGGTGCGCTCCGTGG
TCGCCCTCGCCACGGCCAAGAAGGCCAAGGTGGTGCTTGCCGCGCCCACCGGCCGGGCTGCCAAGCGGCTCGCCGAGCTG
ACCGGAGCCGCCGCGTCGACCGTGCACCGCCTGCTGGAACTCAAGCCGGGCGGCGACGCGGCCTACGACCGCGACCGGCC
GCTCGACGCGGACCTGGTGGTGGTCGACGAGGCGTCGATGCTGGACCTGCTGTTGGCGAACAAGCTGGTGAAGGCGGTTC
CCCCGGGGGCACACCTGCTGTTCGTCGGCGATGTGGACCAGTTGCCGAGCGTGGGTGCGGGGGAGGTGCTGCGGGATCTG
CTGACACCGGGCGGGCCGGTCCCTGCGGTGCGGCTCACCCGTATCTTCCGCCAGGCCCAGCAGTCCGGTGTGGTGACGAA
CGCGCACCGGATCAACTCGGGGGTGCCACCGGTCACCCAGGGGCTGGCCGATTTCTTCCTCTTCGCCGAAGAGGACTCGG
AGGAGGCGGCCAGGCTGACAGTGGACGTGGTGGCCCGGCGAATTCCGGCCAGGTTCGGTCTCGACCCGCGCCGCGACGTC
CAGGTGCTCACCCCCATGCACCGCGGCCCGGCCGGCGCGGGCGTGCTCAACGGACTGCTCCAGCAGGCCGTCACGCCGGC
CCGCCCTGATGTGGCCGAGCGCCGGTTCGGCGGGCGTACCTTCCGGGTCGGTGACAAGGTCACCCAGATCAGAAACAACT
ACGACAAGGGCGCCAACGGCGTTTTCAACGGCACCGTGGGGGTCGTCACCAGCCTCGACGTGGTCGAGCAGCGACTGACG
GTGCGGACCGACGAGGACGAAGAGATCGGCTACGACTTCGACGAGCTGGACGAGTTGACGCATGCCTACGCGGTCACGAT
CCACCGTTCGCAGGGCAGCGAGTATCCGGCGGTAGTGATCCCCGTCACTACCGGCGCCTGGATGATGCTCCAGCGCAACC
TGCTTTACACCGCCGTCACCCGGGCGAAACGCCTGGTCGTGCTGGTGGGCTCCCGTCGTGCGATCGGGCAGGCGGTGCGC
ACGGTCTCTGCGGGTCGCCGCTTCACCGCTCTCGACCATCGGCTTGATCTGGGCGCAAAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(339-517)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(576-642)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-709)

Helix-hairpin-helix domain (HHH_5)

(97-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.013

100

0.366