Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG370_RS04660 Genome accession   NZ_CP107913
Coordinates   1092649..1093668 (-) Length   339 a.a.
NCBI ID   WP_328460872.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087649..1098668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - cytR 1092649..1093668 (-) 1020 - - Regulator

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 35772.06 Da        Isoelectric Point: 6.3522

>NTDB_id=648844 OG370_RS04660 WP_328460872.1 1092649..1093668(-) (cytR) [Streptomyces sp. NBC_00448]
MVRMVGIKDVARQAGVSVGTVSNVINRPDLVSEETRDRVQSVIKQLGYVRSESARQLRAGQSRIMALLVLDMGNPFFVDV
ARGAESAAREAGLGVMLCNSGQSASEEATYVSLFAEQRVRGVLLTPADPTGASLDLLRQQNVPFVLVDRGTGEAEGCSVS
VDDTIGGALAGRHLVSAGHRTIAYISGPPHLQQVKDRRVGMLQALAEAGLGPEALLEIPAQRLDVAAGRDAASRLLGLAQ
RPTAVFCANDLLALGVLQVVYAAGIAVPRDLAIVGYDDIEFAAAAVVPLTSVRQPAAEMGRMAAELLLEETGPRAAQHQH
QRAVLLPELVVRGSSLPVR

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=648844 OG370_RS04660 WP_328460872.1 1092649..1093668(-) (cytR) [Streptomyces sp. NBC_00448]
ATGGTGCGAATGGTCGGGATCAAGGACGTGGCGCGGCAGGCCGGCGTGTCGGTGGGCACGGTGTCCAACGTGATCAACCG
TCCCGACCTGGTCTCCGAGGAGACCAGGGACCGCGTGCAGAGCGTCATCAAGCAACTCGGCTATGTCCGCAGCGAGTCGG
CCCGCCAGTTGCGGGCCGGCCAGAGCCGGATCATGGCGCTGCTCGTCCTCGACATGGGCAACCCGTTCTTCGTGGACGTC
GCGCGCGGCGCGGAGTCCGCGGCCCGCGAGGCGGGGCTGGGCGTGATGCTCTGCAACAGCGGCCAGAGCGCCTCCGAGGA
GGCGACGTACGTCTCGCTCTTCGCGGAGCAGCGGGTGCGCGGGGTGCTGCTCACCCCGGCCGACCCGACCGGCGCCAGCC
TGGACCTGCTCCGGCAGCAGAACGTGCCGTTCGTCCTGGTGGACCGGGGCACCGGCGAGGCCGAGGGGTGCTCGGTGTCG
GTCGACGACACGATCGGGGGCGCGCTGGCCGGCCGCCACCTGGTCTCCGCCGGGCACCGCACCATCGCCTACATCAGCGG
GCCGCCGCACCTGCAGCAGGTCAAGGACCGCCGGGTCGGCATGCTCCAGGCCCTCGCCGAGGCCGGGCTCGGCCCCGAGG
CGCTGCTGGAGATCCCCGCGCAGCGGCTCGACGTCGCCGCCGGCCGCGACGCCGCCTCCCGGCTGCTCGGCCTCGCCCAG
CGCCCCACCGCGGTGTTCTGCGCCAACGACCTGCTCGCCCTCGGCGTCCTTCAGGTCGTCTACGCCGCCGGTATCGCCGT
CCCGCGCGACCTGGCGATCGTCGGCTACGACGACATCGAGTTCGCCGCGGCCGCGGTCGTCCCCCTCACCTCCGTACGGC
AGCCGGCCGCCGAGATGGGCCGGATGGCCGCGGAACTCCTGCTGGAGGAGACCGGACCCCGCGCCGCCCAGCACCAGCAC
CAACGTGCCGTCCTGCTCCCCGAGTTGGTCGTCCGCGGCTCCAGCCTGCCGGTGCGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(172-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.607

99.115

0.363