Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LQ060_RS12655 Genome accession   NZ_CP091221
Coordinates   2608734..2610104 (-) Length   456 a.a.
NCBI ID   WP_002310456.1    Uniprot ID   -
Organism   Enterococcus faecium strain 642     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2603734..2615104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ060_RS12640 (LQ060_12645) epsC 2605057..2605593 (-) 537 WP_002293094.1 serine O-acetyltransferase EpsC -
  LQ060_RS12645 (LQ060_12650) gltX 2605913..2607373 (-) 1461 WP_002293095.1 glutamate--tRNA ligase -
  LQ060_RS12650 (LQ060_12655) - 2607543..2608700 (-) 1158 WP_002287448.1 PIN/TRAM domain-containing protein -
  LQ060_RS12655 (LQ060_12660) radA 2608734..2610104 (-) 1371 WP_002310456.1 DNA repair protein RadA Machinery gene
  LQ060_RS12660 (LQ060_12665) - 2610167..2610694 (-) 528 WP_104835742.1 dUTP diphosphatase -
  LQ060_RS12665 (LQ060_12670) proB 2610924..2611730 (+) 807 WP_002314318.1 glutamate 5-kinase -
  LQ060_RS12670 (LQ060_12675) - 2611727..2612974 (+) 1248 WP_002310461.1 glutamate-5-semialdehyde dehydrogenase -
  LQ060_RS12675 (LQ060_12680) - 2613050..2613394 (+) 345 WP_002310463.1 hypothetical protein -
  LQ060_RS12680 (LQ060_12685) - 2613511..2613837 (-) 327 WP_002310464.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49916.56 Da        Isoelectric Point: 7.4545

>NTDB_id=648560 LQ060_RS12655 WP_002310456.1 2608734..2610104(-) (radA) [Enterococcus faecium strain 642]
MAKKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTTDRRTRTSLTGEKAKPTKIADVVPKKEPRVKTKLEELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISR
AIEHISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEERLDGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGNWEAPKGIEIVGVATLAETLKRVFH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=648560 LQ060_RS12655 WP_002310456.1 2608734..2610104(-) (radA) [Enterococcus faecium strain 642]
ATGGCAAAAAAATCAAAAGTACAATTTGTTTGCCAAAATTGCGGGTATGTGTCGCCTAAGTTCTTGGGACGCTGCCCAAA
TTGCGGAAAATGGAATACGATGGTCGAAGAAATCGAACAAGATACAACAGACCGCAGAACGCGGACAAGTTTGACAGGAG
AAAAAGCGAAACCAACAAAAATCGCAGACGTCGTCCCTAAAAAAGAACCTCGGGTCAAAACGAAATTAGAAGAACTGAAC
CGTGTGCTAGGTGGAGGCGTGGTTCCGGGATCCATGGTCTTGATTGGTGGAGATCCAGGTATTGGTAAATCCACTTTGCT
GTTACAAGTTTCTCAACAATTAGCAGCCATAGGCGGGAAAGTCTTGTATGTATCCGGCGAAGAAAGCGCAGAACAGATAA
AATTACGCGCGGAGCGCCTCGGAAGTATCAACACAGAATTTTATCTATACGCTGAAACAGATATGAATGAAATCAGTCGT
GCCATCGAACATATCTCCCCTGATTATGTTATTATTGATTCCATCCAAACGATGACGCAGCCAGACATCACAAGTGTGGC
AGGAAGCGTCAGCCAAGTAAGAGAAACCACTGCAGAATTACTCAAAATCGCTAAAACGAATGGAATTGCCATTTTTATCG
TCGGTCATGTTACGAAAGAAGGTTCGATCGCCGGTCCAAGAATGTTAGAGCATATGGTGGATACAGTGTTATATTTTGAA
GGTGAACAACATCATAGTTTCCGAATTTTACGAGCGGTAAAAAACCGATTTGGCTCAACGAACGAGATTGGGATTTTTGA
AATGCATGAGCATGGATTGGAAGAAGTCGCTAACCCTTCACAGATTTTCTTGGAGGAACGCCTAGACGGTGCGACTGGCT
CTGCTATCGTTGTAGCAATGGAAGGAACACGCCCAATTTTGGTAGAGATCCAAGCATTAGTCACACCTACTATGTTCGGA
AATGCTAAGCGAACAACAACAGGTCTTGATTTCAATCGTGTATCTCTAATCATGGCAGTGCTGGAAAAAAGAGCTGGACT
ACTTCTTCAGAATCAAGATGCTTACTTAAAAGCTGCAGGTGGGGTAAAATTAAATGAACCAGCGATTGATTTAGCTATCG
CTGTCAGTATTGCTTCAAGCTACAAAGAAAAAGGAACACAGCCGACGGAATGTTTCATCGGTGAAATCGGACTGACTGGA
GAAATCAGACGTGTCAGTCATATTGAACAACGGGTCAAAGAAGTCCAAAAACTCGGCTTCACAAAAGTTTACCTGCCTAA
AAACAACTTAGGCAACTGGGAAGCGCCAAAAGGAATCGAGATCGTTGGAGTAGCAACTTTGGCTGAAACGTTGAAGCGTG
TGTTCCACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(70-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.286

99.781

0.741
  radA Streptococcus pneumoniae Rx1

74.286

99.781

0.741
  radA Streptococcus pneumoniae D39

74.286

99.781

0.741
  radA Streptococcus pneumoniae R6

74.286

99.781

0.741
  radA Streptococcus pneumoniae TIGR4

74.286

99.781

0.741
  radA Streptococcus mitis SK321

74.066

99.781

0.739
  radA Bacillus subtilis subsp. subtilis str. 168

67.627

98.904

0.669