Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LXE94_RS07950 Genome accession   NZ_CP090125
Coordinates   1512751..1513029 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain Bs96     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1507751..1518029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS07930 (LXE94_07910) panEB 1508938..1509849 (+) 912 WP_017696822.1 ketopantoate reductase family protein -
  LXE94_RS07935 (LXE94_07915) ampS 1509883..1511115 (-) 1233 WP_003232341.1 aminopeptidase -
  LXE94_RS07940 (LXE94_07920) ykpC 1511225..1511359 (-) 135 WP_003238865.1 protein YkpC -
  LXE94_RS07945 (LXE94_07925) mreBH 1511460..1512467 (-) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  LXE94_RS07950 (LXE94_07930) abrB 1512751..1513029 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  LXE94_RS07955 (LXE94_07935) kinC 1513219..1514505 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  LXE94_RS07960 (LXE94_07940) ykqA 1514521..1515348 (+) 828 WP_257986602.1 gamma-glutamylcyclotransferase -
  LXE94_RS07965 (LXE94_07945) ktrC 1515411..1516076 (+) 666 WP_121591766.1 Ktr system potassium transporter KtrC -
  LXE94_RS07970 (LXE94_07950) ade 1516232..1517965 (+) 1734 WP_257986603.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=640689 LXE94_RS07950 WP_003244728.1 1512751..1513029(+) (abrB) [Bacillus subtilis strain Bs96]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=640689 LXE94_RS07950 WP_003244728.1 1512751..1513029(+) (abrB) [Bacillus subtilis strain Bs96]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576