Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LWC06_RS09570 Genome accession   NZ_CP090006
Coordinates   1806734..1808461 (+) Length   575 a.a.
NCBI ID   WP_060678430.1    Uniprot ID   -
Organism   Virgibacillus halodenitrificans strain ASH15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801734..1813461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWC06_RS09545 - 1802984..1803217 (+) 234 WP_019378274.1 exodeoxyribonuclease VII small subunit -
  LWC06_RS09550 - 1803218..1804102 (+) 885 WP_019378275.1 polyprenyl synthetase family protein -
  LWC06_RS09555 - 1804785..1805366 (+) 582 WP_233881121.1 hypothetical protein -
  LWC06_RS09560 - 1805384..1806217 (+) 834 WP_077358021.1 TlyA family RNA methyltransferase -
  LWC06_RS09565 ahrC 1806255..1806704 (+) 450 WP_019378278.1 transcriptional regulator AhrC/ArgR -
  LWC06_RS09570 recN 1806734..1808461 (+) 1728 WP_060678430.1 DNA repair protein RecN Machinery gene
  LWC06_RS09575 spoIVB 1808695..1809954 (+) 1260 WP_033354082.1 SpoIVB peptidase -
  LWC06_RS09580 spo0A 1810217..1810996 (+) 780 WP_019378282.1 sporulation transcription factor Spo0A -
  LWC06_RS09585 - 1811107..1812453 (-) 1347 WP_233881123.1 aspartate kinase -
  LWC06_RS09590 - 1812614..1812844 (-) 231 WP_019378284.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65743.60 Da        Isoelectric Point: 5.3037

>NTDB_id=640070 LWC06_RS09570 WP_060678430.1 1806734..1808461(+) (recN) [Virgibacillus halodenitrificans strain ASH15]
MLTELSIHDFAIIEDISITFNEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGTKKAEIEGLFIIDSDTHPIYKV
GKEYGIEISDKQIVLQRTITANGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMNPEHHIDLLDMYDAGQIRKTK
QEYRELFNKLLSLKNRYKKLSENEQEMAHRLDLLQFQLKEIEQADLAPDEDQKLEEERDSLVNYERIYQALQDGYNALYG
EQRGLEWVNKAQVALQSAATYDKFIEEKAEAISNHYYALEELTYELRNYTEMQQYSPSRLNELEGRLNEISRLKKKYGAT
VNEILEYMGKVEEEIEEITNKDSHLSKLDEEIKELEKDAYLEARQLHDLRKKAANSLTANIHKELKGLYLEKASFAISFG
EVDGYNEEKLPLHKNGFDQIRFLISTNTGEPLKELNKIASGGELSRIMLVLKKIFSRHQGVTSVIFDEVDTGVSGRVAQA
IAEKIYQISQASQVLCITHLPQVASMADTHKFIKKLEKNQRTFTSVSELTIEEQIDELSRMITGTKLTETAKEHGKEMLE
LANHYKEQKNTDKFM

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=640070 LWC06_RS09570 WP_060678430.1 1806734..1808461(+) (recN) [Virgibacillus halodenitrificans strain ASH15]
TTGTTAACAGAACTATCTATTCATGACTTCGCGATTATTGAAGATATATCTATAACGTTTAATGAAGGATTAACGGTTCT
AACTGGTGAGACTGGTGCTGGGAAATCCATTATTATTGATGCAGTGCAGTTATTGGCTGGCGGCAGAGGATCTGTCGAAT
TTGTGAGACATGGAACTAAGAAAGCGGAGATTGAAGGTTTATTCATTATTGATTCTGACACCCATCCCATTTATAAAGTA
GGAAAAGAATATGGTATAGAAATATCTGATAAGCAGATTGTGTTACAGCGCACTATTACTGCTAACGGGAAGAGTATATG
CAGAGTAAATAGTAAATTAGTTACACTTGCAATATTGAGGGAGTTTGGAAAGACATTAATTGATATTCACAGTCAGCATG
AAACGCAGTCGCTTATGAATCCTGAACATCATATCGACTTACTTGATATGTATGATGCAGGTCAAATTAGAAAAACTAAA
CAAGAATATCGTGAACTTTTTAATAAACTTTTATCCCTCAAAAACCGCTATAAGAAATTAAGTGAAAATGAACAGGAAAT
GGCCCATCGGTTAGATCTTCTTCAATTCCAACTTAAGGAAATTGAACAAGCAGATCTAGCCCCTGATGAAGATCAGAAAT
TGGAAGAAGAAAGAGATTCCTTGGTTAATTATGAACGTATTTATCAAGCTTTACAGGATGGCTACAATGCTTTGTATGGA
GAGCAACGAGGGCTGGAATGGGTTAATAAAGCTCAGGTGGCGCTACAATCTGCTGCTACATATGATAAATTTATTGAAGA
AAAAGCTGAAGCAATCTCTAATCACTATTATGCTTTAGAGGAATTAACTTATGAACTACGGAATTATACAGAAATGCAAC
AATACTCCCCAAGCAGGTTGAATGAACTTGAGGGTAGATTAAACGAAATCAGCCGATTGAAGAAGAAATATGGTGCTACG
GTAAATGAAATTCTGGAATATATGGGAAAAGTAGAAGAGGAAATCGAAGAAATAACTAACAAAGATTCACACTTGTCTAA
GTTGGATGAGGAAATAAAGGAATTAGAAAAAGATGCATATTTAGAAGCAAGACAATTACATGATTTACGAAAAAAAGCAG
CCAATTCTCTAACTGCAAATATTCATAAAGAATTAAAAGGATTATATTTAGAAAAAGCCTCATTTGCGATTTCGTTTGGA
GAGGTTGATGGTTATAATGAAGAAAAGCTTCCTCTTCATAAAAATGGTTTCGATCAAATACGGTTTTTAATTTCAACAAA
TACAGGTGAACCGCTTAAAGAATTGAACAAAATTGCTTCCGGTGGAGAGCTTTCCAGAATAATGCTTGTTCTTAAAAAGA
TTTTTTCCAGACACCAAGGTGTTACAAGTGTTATTTTTGATGAAGTGGATACAGGAGTTAGTGGCAGGGTTGCACAAGCC
ATTGCTGAAAAAATATATCAAATATCACAAGCTTCGCAAGTACTGTGTATTACACACTTACCACAGGTAGCATCGATGGC
AGATACCCACAAATTTATTAAAAAACTTGAAAAAAACCAGCGCACTTTCACATCTGTCTCGGAGCTTACAATTGAGGAAC
AAATTGATGAACTTAGCAGAATGATAACCGGCACTAAGTTAACCGAGACTGCAAAAGAACATGGAAAAGAGATGCTTGAA
TTAGCAAATCATTATAAAGAGCAAAAAAATACGGATAAATTTATGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.31

99.826

0.532