Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LU294_RS20325 Genome accession   NZ_CP089743
Coordinates   3909588..3911414 (-) Length   608 a.a.
NCBI ID   WP_000003390.1    Uniprot ID   A0A5M9H363
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3904588..3916414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS20290 (LU294_20290) - 3905014..3905811 (-) 798 WP_000673184.1 NAD kinase -
  LU294_RS20295 (LU294_20295) - 3905830..3906468 (-) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  LU294_RS20300 (LU294_20300) - 3906499..3906870 (-) 372 WP_001180002.1 hypothetical protein -
  LU294_RS20305 (LU294_20305) - 3907017..3907595 (+) 579 WP_000191110.1 CYTH domain-containing protein -
  LU294_RS20310 (LU294_20310) - 3907776..3908174 (+) 399 WP_000043380.1 hypothetical protein -
  LU294_RS20315 (LU294_20315) - 3908174..3909067 (+) 894 WP_000360652.1 ClpXP adapter SpxH family protein -
  LU294_RS20320 (LU294_20320) - 3909297..3909470 (+) 174 WP_000754592.1 hypothetical protein -
  LU294_RS20325 (LU294_20325) pepF 3909588..3911414 (-) 1827 WP_000003390.1 oligoendopeptidase F Regulator
  LU294_RS20330 (LU294_20330) - 3911465..3912709 (-) 1245 WP_000612277.1 competence protein CoiA -
  LU294_RS20335 (LU294_20335) - 3912790..3914334 (-) 1545 WP_000799204.1 cardiolipin synthase -
  LU294_RS20340 (LU294_20340) mecA 3914407..3915090 (-) 684 WP_000350710.1 adaptor protein MecA Regulator
  LU294_RS20345 (LU294_20345) - 3915430..3916104 (+) 675 WP_000362603.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70289.54 Da        Isoelectric Point: 4.6399

>NTDB_id=638449 LU294_RS20325 WP_000003390.1 3909588..3911414(-) (pepF) [Bacillus paranthracis strain SHOU-BC01]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEQEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVQSVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=638449 LU294_RS20325 WP_000003390.1 3909588..3911414(-) (pepF) [Bacillus paranthracis strain SHOU-BC01]
ATGTCTGAACAAAACACAGCAAAAACATTACCGGATCGTAACGAAATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAACAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGTTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGATCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACATTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCGTTAGAAGAAATTACGCGTCAACGCCCTCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATTACACATGGCCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGGAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAACTTTAATGCACGCGTTCGTAAATATGACTCTGCACGTCAAGCAGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTCAATCTGTAAATGACAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGAGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGTGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCCTATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGCCATTCT
GTCCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGGGATTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACTATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTAACACCAGACATGCTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTACCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9H363

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488