Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LTK21_RS00205 Genome accession   NZ_CP089161
Coordinates   42303..42698 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SaCF13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 37303..47698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK21_RS00180 (LTK21_00180) thiE 37902..38543 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  LTK21_RS00185 (LTK21_00185) thiM 38545..39336 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  LTK21_RS00190 (LTK21_00190) thiD 39320..40150 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LTK21_RS00195 (LTK21_00195) tenA 40143..40832 (-) 690 WP_000396077.1 thiaminase II -
  LTK21_RS00200 (LTK21_00200) sceD 41219..41914 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  LTK21_RS00205 (LTK21_00205) ssb 42303..42698 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LTK21_RS00210 (LTK21_00210) - 42892..43332 (+) 441 WP_000846746.1 YwpF-like family protein -
  LTK21_RS00215 (LTK21_00215) fabZ 43391..43831 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LTK21_RS00220 (LTK21_00220) murA 43865..45130 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LTK21_RS00225 (LTK21_00225) - 45241..45474 (-) 234 WP_000384523.1 DUF1146 family protein -
  LTK21_RS00230 (LTK21_00230) - 45606..45698 (-) 93 WP_001790611.1 hypothetical protein -
  LTK21_RS00235 (LTK21_00235) - 46036..46440 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=635508 LTK21_RS00205 WP_000932694.1 42303..42698(-) (ssb) [Staphylococcus aureus strain UNC_SaCF13]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=635508 LTK21_RS00205 WP_000932694.1 42303..42698(-) (ssb) [Staphylococcus aureus strain UNC_SaCF13]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992