Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   U719_RS04665 Genome accession   NC_022794
Coordinates   927167..928873 (+) Length   568 a.a.
NCBI ID   WP_023467587.1    Uniprot ID   -
Organism   Exiguobacterium sp. MH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 922167..933873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U719_RS04640 (U719_04740) xseB 922646..922867 (+) 222 WP_023467583.1 exodeoxyribonuclease VII small subunit -
  U719_RS04645 (U719_04745) - 922864..923733 (+) 870 WP_023467584.1 polyprenyl synthetase family protein -
  U719_RS04650 (U719_04750) dxs 923851..925737 (+) 1887 WP_023467585.1 1-deoxy-D-xylulose-5-phosphate synthase -
  U719_RS04655 (U719_04755) - 925744..926550 (+) 807 WP_041255024.1 TlyA family RNA methyltransferase -
  U719_RS04660 (U719_04760) ahrC 926705..927154 (+) 450 WP_023467586.1 transcriptional regulator AhrC/ArgR -
  U719_RS04665 (U719_04765) recN 927167..928873 (+) 1707 WP_023467587.1 DNA repair protein RecN Machinery gene
  U719_RS04670 (U719_04770) spo0A 928877..929599 (+) 723 WP_023467588.1 sporulation transcription factor Spo0A -
  U719_RS04675 (U719_04775) - 929636..930214 (-) 579 WP_023467589.1 dihydrofolate reductase family protein -
  U719_RS04680 (U719_04780) - 930890..931144 (-) 255 WP_023467590.1 DUF2627 family protein -
  U719_RS04685 (U719_04785) - 931267..932922 (+) 1656 WP_023467591.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64162.70 Da        Isoelectric Point: 4.5994

>NTDB_id=63490 U719_RS04665 WP_023467587.1 927167..928873(+) (recN) [Exiguobacterium sp. MH3]
MLAELSIKQFAIIDELQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSAEFVRYGEDRAELEGLFLIEDDHLVYDLA
EEYGIDIEDGLIILRRDLFATGKSVCRVNNKLVTLTILREFGRVLVDMHGQHEHQHLMDSTYHQAILDDFAQETIAPLLQ
AYQSGYQAYEEKRTALQSLAQSEQELAQRIDLLSFQTEEIEGAKLRAHEEDELLVERNRLANFEKLYASLKTAYDALHDE
MRGIDSVGDAMRELQQASSIDEQFSQQSDAIASAFYGLEEVGYAIRDQLETLEFDSNRLDEIEQRLSVFQQLKRKYGATI
EEVIAYGEKIRVELDTMTNRDERIERLKAEVEQLEGELFEIGGRLSQQRRKAAVQLSEAIHLELRELYMEKARFEIRFLQ
DGKTPMLRKNGIDQVEFFIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSVDGQVLCITHLPQVASMADQHLYIRKIEETDRTTTQVNVLSQSDRGNELGRMISGAHMTDLTLRHAEELMDQAKTM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=63490 U719_RS04665 WP_023467587.1 927167..928873(+) (recN) [Exiguobacterium sp. MH3]
ATGCTAGCTGAATTATCGATCAAACAATTTGCGATCATTGACGAGCTACAGATCGACTTTAAAAAAGGAATGACCGTCTT
GACTGGGGAAACAGGTGCCGGTAAATCGATCGTTCTCGACGCGATCGGATTATTGATTGGTGGACGTGGATCCGCGGAAT
TCGTTCGATACGGGGAAGATCGGGCGGAGCTAGAAGGATTGTTTCTGATTGAAGACGACCATCTCGTCTATGATCTCGCA
GAAGAGTATGGTATCGATATCGAAGATGGATTGATCATCTTACGACGTGATCTGTTCGCGACCGGGAAAAGTGTCTGTCG
CGTCAACAATAAGCTGGTCACACTGACGATCTTACGGGAGTTCGGACGTGTCCTCGTCGACATGCACGGGCAACATGAAC
ATCAGCATTTAATGGACAGTACGTATCATCAAGCGATTCTCGATGACTTCGCGCAAGAGACGATTGCACCGCTCCTTCAA
GCCTACCAGTCCGGTTATCAAGCGTATGAAGAAAAACGGACGGCGCTGCAATCGCTCGCGCAAAGTGAGCAAGAACTCGC
TCAACGGATTGATTTACTATCGTTTCAGACGGAAGAGATCGAAGGCGCAAAACTTCGAGCACATGAGGAAGACGAGTTGC
TCGTCGAACGAAATCGTCTTGCGAATTTCGAGAAGCTATATGCGTCGTTAAAGACAGCATACGATGCTTTGCATGATGAG
ATGCGCGGCATCGACTCTGTCGGAGACGCGATGCGTGAATTACAACAAGCATCAAGCATCGACGAACAGTTTTCGCAGCA
GAGTGACGCGATCGCAAGCGCTTTTTATGGACTCGAAGAAGTCGGGTATGCGATTCGAGATCAACTTGAAACACTTGAGT
TTGATTCCAATCGACTCGATGAGATCGAACAACGTTTATCCGTCTTTCAACAACTGAAACGAAAATACGGGGCGACGATC
GAGGAAGTCATTGCGTATGGGGAAAAAATTCGAGTTGAACTTGATACGATGACGAATCGAGATGAACGGATTGAGCGCTT
AAAAGCCGAAGTCGAACAGCTCGAAGGCGAATTGTTTGAGATAGGTGGGCGTCTGTCGCAACAACGTCGAAAAGCGGCCG
TTCAATTAAGCGAAGCGATTCATCTGGAGTTACGTGAGCTCTATATGGAAAAAGCGCGGTTTGAAATTCGTTTTCTTCAA
GACGGGAAGACACCGATGCTACGCAAGAACGGGATCGATCAAGTGGAGTTCTTCATCATGACGAATGCGGGAGAACCATT
CAAGTCGCTCGGAAAAGTCGCATCGGGCGGGGAGTTATCTCGTATCATGCTCGGACTGAAGTCAATCTTCTCGCGCTCGG
TCGGAGTTGCTTCGATCATTTTCGATGAAGTCGATACAGGAGTATCGGGTCGTGTCGCACAAGCGATGGCTGAAAAAATC
TATCGTTTATCGGTAGACGGACAAGTGCTCTGTATTACGCACTTACCGCAAGTCGCTTCGATGGCCGATCAACATCTCTA
TATTCGGAAGATTGAGGAGACGGATCGTACGACGACACAGGTCAACGTCTTGTCTCAGTCAGATCGAGGAAACGAACTAG
GACGGATGATTTCCGGTGCACATATGACGGATTTGACGTTACGCCATGCCGAGGAATTGATGGATCAGGCGAAGACGATG
AAAGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.054

100

0.535

Multiple sequence alignment