Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO011_RS02915 Genome accession   NZ_CP087340
Coordinates   616988..617398 (+) Length   136 a.a.
NCBI ID   WP_071217824.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB008     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611988..622398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS02900 - 612977..615283 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO011_RS02905 - 615328..616101 (-) 774 WP_031966642.1 SDR family oxidoreductase -
  LO011_RS02910 mazG 616213..617019 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  LO011_RS02915 comEA 616988..617398 (+) 411 WP_071217824.1 ComEA family DNA-binding protein Machinery gene
  LO011_RS02920 pcnB 617523..618986 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LO011_RS02925 folK 618983..619465 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO011_RS02930 panB 619511..620320 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO011_RS02935 panC 620324..621172 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO011_RS02940 rapZ 621195..622046 (+) 852 WP_000821671.1 RNase adapter RapZ -
  LO011_RS02945 - 622043..622312 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15671.94 Da        Isoelectric Point: 10.3580

>NTDB_id=628922 LO011_RS02915 WP_071217824.1 616988..617398(+) (comEA) [Acinetobacter baumannii strain DB008]
MQYSMRFWKNKYFVLIMLCLGGISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSHLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628922 LO011_RS02915 WP_071217824.1 616988..617398(+) (comEA) [Acinetobacter baumannii strain DB008]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGGAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACATT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

94.853

100

0.949
  comEA Acinetobacter baumannii strain A118

94.118

100

0.941
  comEA Acinetobacter baylyi ADP1

43.651

92.647

0.404