Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LO004_RS11170 Genome accession   NZ_CP087331
Coordinates   2334617..2335318 (-) Length   233 a.a.
NCBI ID   WP_000594581.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2329617..2340318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS11140 - 2329924..2330367 (-) 444 WP_001246675.1 SRPBCC family protein -
  LO004_RS11145 tadA 2330437..2330940 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  LO004_RS11150 - 2330947..2332071 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO004_RS11155 ung 2332068..2332781 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  LO004_RS11160 - 2332832..2333428 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  LO004_RS11165 gspK 2333658..2334617 (-) 960 WP_000301457.1 type II secretion system minor pseudopilin GspK -
  LO004_RS11170 xcpW 2334617..2335318 (-) 702 WP_000594581.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO004_RS11175 xcpV 2335318..2335698 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO004_RS11180 - 2335688..2336242 (-) 555 WP_000841367.1 type II secretion system protein -
  LO004_RS11185 - 2336252..2336860 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO004_RS11190 - 2336898..2337671 (-) 774 WP_000497298.1 TatD family hydrolase -
  LO004_RS11195 - 2337689..2338030 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  LO004_RS11200 - 2338042..2339022 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  LO004_RS11205 kdsB 2339034..2339795 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26731.68 Da        Isoelectric Point: 9.3468

>NTDB_id=628837 LO004_RS11170 WP_000594581.1 2334617..2335318(-) (xcpW) [Acinetobacter baumannii strain LMG994]
MIKNKYIHIRSFSSRLAERSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=628837 LO004_RS11170 WP_000594581.1 2334617..2335318(-) (xcpW) [Acinetobacter baumannii strain LMG994]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGAACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.283

100

0.983