Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LMD38_RS18600 Genome accession   NZ_CP086328
Coordinates   3590458..3591060 (+) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus pacificus strain anQ-h4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3585458..3596060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS18555 (LMD38_18555) gpsB 3585861..3586196 (-) 336 WP_061184018.1 cell division regulator GpsB -
  LMD38_RS18560 (LMD38_18560) - 3586294..3586848 (-) 555 WP_000862921.1 DUF1273 domain-containing protein -
  LMD38_RS18565 (LMD38_18565) - 3586905..3587324 (-) 420 WP_000546263.1 CotD family spore coat protein -
  LMD38_RS18570 (LMD38_18570) - 3587480..3587947 (-) 468 WP_014893168.1 YppG family protein -
  LMD38_RS18575 (LMD38_18575) - 3588125..3588316 (+) 192 WP_000242661.1 YppF family protein -
  LMD38_RS18580 (LMD38_18580) - 3588341..3588685 (-) 345 WP_000872959.1 YppE family protein -
  LMD38_RS18585 (LMD38_18585) - 3588701..3588943 (-) 243 WP_001252039.1 hypothetical protein -
  LMD38_RS18590 (LMD38_18590) - 3589029..3589205 (+) 177 WP_001982922.1 hypothetical protein -
  LMD38_RS18595 (LMD38_18595) - 3589329..3590354 (-) 1026 WP_029141089.1 DUF2515 domain-containing protein -
  LMD38_RS18600 (LMD38_18600) recU 3590458..3591060 (+) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  LMD38_RS18605 (LMD38_18605) - 3591126..3593819 (+) 2694 WP_227585639.1 PBP1A family penicillin-binding protein -
  LMD38_RS18610 (LMD38_18610) - 3593868..3594386 (-) 519 WP_208754970.1 YpoC family protein -
  LMD38_RS18615 (LMD38_18615) nth 3594390..3595037 (-) 648 WP_000933028.1 endonuclease III -
  LMD38_RS18620 (LMD38_18620) dnaD 3595053..3595760 (-) 708 WP_000728540.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=624311 LMD38_RS18600 WP_000155593.1 3590458..3591060(+) (recU) [Bacillus pacificus strain anQ-h4]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=624311 LMD38_RS18600 WP_000155593.1 3590458..3591060(+) (recU) [Bacillus pacificus strain anQ-h4]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625