Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LCH18_RS14260 Genome accession   NZ_CP083947
Coordinates   2930121..2930519 (-) Length   132 a.a.
NCBI ID   WP_224467409.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2925121..2935519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS14230 (LCH18_14230) - 2925193..2925462 (-) 270 WP_010325935.1 HPr family phosphocarrier protein -
  LCH18_RS14235 (LCH18_14235) rapZ 2925459..2926310 (-) 852 WP_224467402.1 RNase adapter RapZ -
  LCH18_RS14240 (LCH18_14240) panC 2926337..2927179 (-) 843 WP_224467404.1 pantoate--beta-alanine ligase -
  LCH18_RS14245 (LCH18_14245) panB 2927183..2927992 (-) 810 WP_004692301.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LCH18_RS14250 (LCH18_14250) folK 2928029..2928517 (-) 489 WP_224467405.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LCH18_RS14255 (LCH18_14255) pcnB 2928514..2929983 (-) 1470 WP_224467407.1 polynucleotide adenylyltransferase PcnB -
  LCH18_RS14260 (LCH18_14260) comEA 2930121..2930519 (-) 399 WP_224467409.1 ComEA family DNA-binding protein Machinery gene
  LCH18_RS14265 (LCH18_14265) mazG 2930538..2931299 (-) 762 WP_224467410.1 nucleoside triphosphate pyrophosphohydrolase -
  LCH18_RS14270 (LCH18_14270) - 2931418..2932185 (+) 768 WP_224467412.1 SDR family oxidoreductase -
  LCH18_RS14275 (LCH18_14275) - 2932226..2934532 (-) 2307 WP_004979149.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14621.14 Da        Isoelectric Point: 10.8498

>NTDB_id=608767 LCH18_RS14260 WP_224467409.1 2930121..2930519(-) (comEA) [Acinetobacter johnsonii strain CSUSB1]
MIKIKVSLLIIALLLLSLLAWVPSGYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQAQPVLSANKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=608767 LCH18_RS14260 WP_224467409.1 2930121..2930519(-) (comEA) [Acinetobacter johnsonii strain CSUSB1]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGCTATTACTGAGTTTATTGGCTTGGGTGCCCAGTGGTTATGC
ACAGTCTTTTGATCAGAACTACCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCGCCAAAGAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTTGAGCGCAAATAAAATTAGTTTAAATCAAGCCAGTGTCGAT
CAATTACAGCAGCTTCAGGGTGTGGGTTTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAGCTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACTCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

53.279

92.424

0.492
  comEA Acinetobacter baumannii D1279779

50.806

93.939

0.477
  comEA Acinetobacter baylyi ADP1

44.86

81.061

0.364