Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K8Z47_RS16225 Genome accession   NZ_CP083269
Coordinates   3176456..3176878 (+) Length   140 a.a.
NCBI ID   WP_028414496.1    Uniprot ID   -
Organism   Priestia aryabhattai strain NM1_A2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3171456..3181878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z47_RS16200 - 3171808..3172641 (-) 834 WP_223546165.1 AraC family transcriptional regulator -
  K8Z47_RS16205 - 3172844..3173665 (+) 822 WP_047750474.1 sensor histidine kinase -
  K8Z47_RS16210 - 3173666..3174307 (+) 642 WP_223546167.1 response regulator transcription factor -
  K8Z47_RS16215 - 3174442..3175821 (+) 1380 WP_223546169.1 PepSY domain-containing protein -
  K8Z47_RS16220 - 3175851..3176315 (+) 465 WP_028414495.1 FixH family protein -
  K8Z47_RS16225 nucA/comI 3176456..3176878 (+) 423 WP_028414496.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  K8Z47_RS16230 - 3177033..3177386 (+) 354 WP_223546171.1 DUF1516 family protein -
  K8Z47_RS16235 - 3177427..3178020 (-) 594 WP_028414498.1 hypothetical protein -
  K8Z47_RS16240 - 3178173..3178829 (-) 657 WP_028414499.1 TetR/AcrR family transcriptional regulator -
  K8Z47_RS16245 - 3178852..3180129 (-) 1278 WP_028414500.1 glycosyltransferase -
  K8Z47_RS16250 - 3180462..3180947 (-) 486 WP_108674790.1 hypothetical protein -
  K8Z47_RS16255 fsa 3181026..3181694 (-) 669 WP_028414502.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15315.15 Da        Isoelectric Point: 4.4990

>NTDB_id=605262 K8Z47_RS16225 WP_028414496.1 3176456..3176878(+) (nucA/comI) [Priestia aryabhattai strain NM1_A2]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNTSYDEVISFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=605262 K8Z47_RS16225 WP_028414496.1 3176456..3176878(+) (nucA/comI) [Priestia aryabhattai strain NM1_A2]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTAATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTCATTTCCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCCCATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507