Detailed information NTG0600907

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: K7I17_RS01915
• Genome accession: NZ_CP082279
• Coordinates: 381099..382247 (+)
• Length: 382 a.a.
• NCBI ID: WP_013351004.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Bam1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 376099..387247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7I17_RS01895 (K7I17_01895)	-	376496..377179 (-)	684	WP_014469746.1	ABC transporter ATP-binding protein	-
K7I17_RS01900 (K7I17_01900)	-	377194..378630 (-)	1437	WP_013351001.1	ABC transporter permease	-
K7I17_RS01905 (K7I17_01905)	-	378843..379526 (+)	684	WP_013351002.1	response regulator transcription factor	-
K7I17_RS01910 (K7I17_01910)	-	379513..380940 (+)	1428	WP_161988189.1	HAMP domain-containing sensor histidine kinase	-
K7I17_RS01915 (K7I17_01915)	rapC	381099..382247 (+)	1149	WP_013351004.1	tetratricopeptide repeat protein	Regulator
K7I17_RS01920 (K7I17_01920)	phrC	382231..382350 (+)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
K7I17_RS01925 (K7I17_01925)	-	382498..382599 (-)	102	WP_013351006.1	YjcZ family sporulation protein	-
K7I17_RS01930 (K7I17_01930)	-	382694..384058 (-)	1365	WP_014469748.1	aspartate kinase	-
K7I17_RS01935 (K7I17_01935)	ceuB	384472..385425 (+)	954	WP_013351008.1	ABC transporter permease	Machinery gene
K7I17_RS01940 (K7I17_01940)	-	385415..386362 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
K7I17_RS01945 (K7I17_01945)	-	386356..387114 (+)	759	WP_013351009.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45545.80 Da
• Isoelectric Point: 5.0674

>NTDB_id=600907 K7I17_RS01915 WP_013351004.1 381099..382247(+) (rapC) [Bacillus amyloliquefaciens strain Bam1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=600907 K7I17_RS01915 WP_013351004.1 381099..382247(+) (rapC) [Bacillus amyloliquefaciens strain Bam1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATCACGTATTATAAACAGGCTGAGAAAAAATTGGCCT
TCGTATCGGACCACGTGGAGCGCGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAATGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTGTTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAT
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAGGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.723	100	0.827
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571