Detailed information NTG0596853

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: K4120_RS01960
• Genome accession: NZ_CP081488
• Coordinates: 392571..393719 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LZN01
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 387571..398719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K4120_RS01940 (K4120_01940)	-	387992..388675 (-)	684	WP_032866951.1	ABC transporter ATP-binding protein	-
K4120_RS01945 (K4120_01945)	-	388690..390102 (-)	1413	WP_020955321.1	ABC transporter permease	-
K4120_RS01950 (K4120_01950)	-	390315..390998 (+)	684	WP_007410267.1	response regulator transcription factor	-
K4120_RS01955 (K4120_01955)	-	390985..392418 (+)	1434	WP_020955322.1	ATP-binding protein	-
K4120_RS01960 (K4120_01960)	rapC	392571..393719 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
K4120_RS01965 (K4120_01965)	phrC	393703..393822 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
K4120_RS01970 (K4120_01970)	-	393972..394082 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
K4120_RS01975 (K4120_01975)	-	394162..395526 (-)	1365	WP_032866947.1	aspartate kinase	-
K4120_RS01980 (K4120_01980)	ceuB	395940..396893 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
K4120_RS01985 (K4120_01985)	-	396883..397830 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
K4120_RS01990 (K4120_01990)	-	397824..398582 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=596853 K4120_RS01960 WP_007410270.1 392571..393719(+) (rapC) [Bacillus velezensis strain LZN01]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=596853 K4120_RS01960 WP_007410270.1 392571..393719(+) (rapC) [Bacillus velezensis strain LZN01]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCAGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568