Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EGT68_RS01915 Genome accession   NZ_CP078042
Coordinates   401725..402384 (-) Length   219 a.a.
NCBI ID   WP_005403261.1    Uniprot ID   D0SN63
Organism   Acinetobacter junii strain AJ_068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396725..407384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS01880 (EGT68_001880) - 397382..398056 (+) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -
  EGT68_RS01885 (EGT68_001885) - 398076..398708 (+) 633 WP_004909421.1 ABC transporter substrate-binding protein -
  EGT68_RS01890 (EGT68_001890) - 398720..399007 (+) 288 WP_125272283.1 STAS domain-containing protein -
  EGT68_RS01895 (EGT68_001895) - 399062..399589 (-) 528 WP_039047480.1 hypothetical protein -
  EGT68_RS01900 (EGT68_001900) - 399591..400604 (-) 1014 WP_004964376.1 magnesium and cobalt transport protein CorA -
  EGT68_RS01905 (EGT68_001905) - 400755..401339 (+) 585 WP_004964372.1 TIGR00730 family Rossman fold protein -
  EGT68_RS01910 (EGT68_001910) - 401349..401735 (+) 387 WP_125272282.1 NUDIX domain-containing protein -
  EGT68_RS01915 (EGT68_001915) comF 401725..402384 (-) 660 WP_005403261.1 phosphoribosyltransferase family protein Machinery gene
  EGT68_RS01920 (EGT68_001920) recG 402377..404422 (-) 2046 WP_125272281.1 ATP-dependent DNA helicase RecG -
  EGT68_RS01925 (EGT68_001925) - 404442..405260 (+) 819 WP_004964357.1 NAD(P)H-binding protein -
  EGT68_RS01930 (EGT68_001930) - 405385..406350 (+) 966 WP_004964356.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25003.22 Da        Isoelectric Point: 8.8068

>NTDB_id=586461 EGT68_RS01915 WP_005403261.1 401725..402384(-) (comF) [Acinetobacter junii strain AJ_068]
MFKLLSRGAQQVADYFTACHLCDIGVRAHHGVCQSCWQQLPWLKHKIERHQQDILVACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSQVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=586461 EGT68_RS01915 WP_005403261.1 401725..402384(-) (comF) [Acinetobacter junii strain AJ_068]
ATGTTTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACACCATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTGTTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGATTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCAAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0SN63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.115

95.434

0.612
  comF Acinetobacter baumannii D1279779

63.636

95.434

0.607