Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RVR_RS11730 Genome accession   NZ_AP018365
Coordinates   2855774..2857996 (-) Length   740 a.a.
NCBI ID   WP_202233797.1    Uniprot ID   A0A7U3VNC4
Organism   Streptomyces sp. SN-593     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2850774..2862996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recD/recD2/recDB 2855774..2857996 (-) 2223 - - Machinery gene

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79594.96 Da        Isoelectric Point: 6.7027

>NTDB_id=58237 RVR_RS11730 WP_202233797.1 2855774..2857996(-) (recD/recD2/recDB) [Streptomyces sp. SN-593]
MGEAPHLSVLEGVLERITYANEDNGYTVARVDTGRGAGDLLTVVGALLGAQPGESLRMHGRWGSHPQYGKQFTVENYTTV
LPATVQGIRRYLGSGLIKGIGPRIAERIVEHFGTDTLDVIETEATRLVEVPGLGPKRTKLIAAAWEEQKAIKEVMVFLQG
VGVSTSIAVRIYKSYGDASISVVKNQPYRLASEVWGIGFLTADRLAQAVGIPHDSPERVKAGLQYALSQATDSGNCFLPE
ERLIADAVKLLQVDTGLVIECLGELADEEGVVRERVPSPDGDGEPVRAVYLVPFHRAEIALSAQVLRLLRGPEDRMPAFQ
DVDWDKALAWLADRTGADLAPEQQEAVRLALTQKVAVLTGGPGCGKSFTVRSVVALAAAKKAKVVLAAPTGRAAKRLAEL
TGAPASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDL
LAPGGPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPVTQGLADFFLFAEEDSEEAARLTVDVVARRIPARFGLDPRRDV
QVLTPMHRGPAGAGVLNGLLQQAVTPSRPDVAERRFGGRTFRVGDKVTQIRNNYEKGANGVFNGTVGVVTALDAVEQKLT
VRTDEDEEVGYDFDELDELTHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRAIGQAVR
TVSAGRRFTALDHRLDLGAK

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=58237 RVR_RS11730 WP_202233797.1 2855774..2857996(-) (recD/recD2/recDB) [Streptomyces sp. SN-593]
ATGGGTGAGGCACCGCACCTCTCGGTCCTGGAGGGCGTCCTTGAGCGGATCACGTACGCCAACGAGGACAACGGCTACAC
GGTCGCGCGCGTCGACACCGGCCGCGGCGCCGGCGACCTGCTCACCGTGGTCGGCGCCCTGCTCGGCGCGCAGCCCGGTG
AGTCCCTGCGCATGCACGGCCGCTGGGGTTCGCACCCGCAGTACGGCAAGCAGTTCACGGTGGAGAACTACACGACGGTC
CTGCCCGCCACCGTGCAGGGGATCCGCCGCTATCTCGGTTCCGGGCTCATCAAGGGCATCGGGCCGCGCATCGCCGAGCG
CATCGTGGAGCACTTCGGCACCGACACGCTGGACGTCATCGAGACCGAGGCCACCCGCCTGGTCGAGGTGCCGGGTCTCG
GACCGAAGCGGACGAAGCTGATCGCCGCCGCATGGGAGGAGCAGAAGGCGATCAAGGAGGTGATGGTCTTCCTCCAAGGC
GTGGGGGTCTCCACGTCCATCGCCGTGCGGATCTACAAGAGTTACGGCGACGCGTCCATCTCCGTGGTGAAGAACCAGCC
ATATCGGCTCGCCTCCGAGGTGTGGGGCATCGGGTTCCTGACCGCCGACCGGCTCGCGCAGGCCGTCGGCATCCCGCACG
ACAGCCCCGAGCGGGTCAAGGCCGGCCTCCAGTACGCCCTGTCGCAGGCCACGGACAGCGGCAACTGCTTCCTGCCCGAG
GAGCGCTTGATAGCCGACGCGGTGAAGCTGCTTCAGGTGGACACCGGCCTGGTGATCGAGTGCCTGGGGGAGTTGGCCGA
CGAGGAGGGCGTGGTGCGCGAGCGGGTCCCGTCGCCCGACGGCGACGGCGAGCCGGTCAGGGCGGTGTACCTGGTGCCGT
TCCACCGCGCGGAGATCGCCCTCTCCGCCCAGGTGCTGCGACTGCTGCGCGGGCCGGAGGACCGGATGCCGGCCTTCCAG
GATGTCGACTGGGACAAGGCGCTGGCGTGGCTCGCCGACCGGACCGGCGCGGACCTCGCCCCCGAGCAGCAGGAGGCCGT
GCGCCTGGCGCTCACGCAGAAGGTCGCGGTGCTCACCGGCGGCCCGGGCTGCGGCAAGTCGTTCACGGTGCGCTCGGTGG
TAGCCCTGGCGGCTGCCAAGAAGGCCAAGGTGGTGCTCGCCGCCCCGACCGGCAGGGCCGCCAAGCGGCTCGCCGAGTTG
ACCGGGGCCCCCGCCTCGACGGTGCACCGCCTGCTGGAGCTCAAGCCGGGCGGCGACGCGGCGTACGACCGTGACCGGCC
GCTGGACGCGGACCTCGTGGTGGTCGACGAGGCGTCGATGCTGGACCTGCTGCTGGCGAACAAACTGGTGAAGGCGGTGC
CACCCGGGGCGCACCTGCTGTTCGTCGGCGACGTGGACCAATTGCCGAGCGTGGGGGCGGGCGAGGTGCTGCGGGACCTG
CTGGCCCCGGGTGGACCGGTGCCGGCCGTGCGGCTGACCCGTATCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTGACCAA
CGCGCACCGGATCAACTCGGGAGTGCCGCCGGTCACTCAGGGACTGGCCGATTTCTTCCTCTTCGCCGAGGAGGACTCGG
AGGAGGCGGCCCGGCTGACAGTCGACGTCGTGGCCCGTCGGATTCCGGCCAGGTTCGGCCTCGACCCCCGCCGGGACGTC
CAGGTGCTCACCCCGATGCACCGCGGCCCGGCCGGCGCCGGTGTGCTCAACGGCCTCCTCCAGCAGGCTGTCACCCCCTC
CCGCCCGGACGTGGCGGAGCGCCGCTTCGGCGGCCGTACCTTCCGCGTCGGCGACAAGGTCACGCAGATCAGGAACAACT
ACGAGAAGGGCGCCAACGGCGTCTTCAACGGCACCGTGGGCGTGGTGACCGCCCTCGACGCGGTCGAGCAGAAGCTCACG
GTGCGGACTGACGAGGACGAGGAAGTCGGATACGACTTCGACGAACTGGACGAGCTGACCCACGCCTACGCCGTCACGAT
CCACAGATCGCAGGGCAGCGAGTACCCGGCGGTGGTGATCCCCGTCACTACCGGGGCTTGGATGATGCTCCAACGCAACC
TGCTTTACACCGCGGTCACGAGGGCGAAACGCCTGGTCGTGCTGGTGGGGTCGCGTCGGGCGATCGGGCAGGCCGTGCGG
ACGGTCTCCGCGGGTCGTCGCTTCACGGCTCTCGACCATCGGCTTGATCTGGGCGCAAAATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-709)

AAA domain (AAA_30)

(339-517)

Helix-hairpin-helix domain (HHH_5)

(97-145)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(576-642)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3VNC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.53

100

0.372

Multiple sequence alignment