Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I6L24_RS02705 Genome accession   NZ_CP077369
Coordinates   554037..555461 (+) Length   474 a.a.
NCBI ID   WP_086044365.1    Uniprot ID   A0A2K8UP47
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 549037..560461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS02685 (I6L24_02685) thrC 549321..550460 (+) 1140 WP_004281061.1 threonine synthase -
  I6L24_RS02690 (I6L24_02690) - 550518..551579 (-) 1062 WP_004281060.1 serine hydrolase -
  I6L24_RS02695 (I6L24_02695) - 551799..552434 (+) 636 WP_004281059.1 response regulator -
  I6L24_RS02700 (I6L24_02700) pilS 552457..554022 (+) 1566 WP_004281058.1 sensor histidine kinase Regulator
  I6L24_RS02705 (I6L24_02705) pilR 554037..555461 (+) 1425 WP_086044365.1 sigma-54-dependent transcriptional regulator Regulator
  I6L24_RS02710 (I6L24_02710) - 555462..556634 (-) 1173 WP_216986389.1 S41 family peptidase -
  I6L24_RS02715 (I6L24_02715) gpmI 556665..558212 (-) 1548 WP_100357783.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6L24_RS02720 (I6L24_02720) lptG 558337..559407 (-) 1071 WP_004281054.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53561.74 Da        Isoelectric Point: 6.1616

>NTDB_id=580983 I6L24_RS02705 WP_086044365.1 554037..555461(+) (pilR) [Acinetobacter lwoffii strain FDAARGOS 1394]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEYAKKCLANHQYDACLTDLNLPDGNGLELLDWIGNLYPALP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNDALEHKMLIGQSMPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLEALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFIQKICQEWGISNKKLTERSKEFLLGQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNT
LTSEIIATETLIAPKKLPEEGLELYLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=580983 I6L24_RS02705 WP_086044365.1 554037..555461(+) (pilR) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGAATGGGGAACAACAACCACTGGTGCTCTTGGTGGATGATGAGGAAGATTTATGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGCACGCACATTGCCCATCGTCTGGAATACGCTAAAAAATGCCTTGCCAATCATCAGTATGATGCCT
GTCTGACCGACCTGAATCTGCCCGATGGCAATGGTTTGGAGTTACTGGATTGGATTGGCAATCTTTACCCGGCACTTCCG
GTCGCGGTTCTGACCGCCTATGGCAACATGGAAATCGCCATTGCTGCGCTCAAAGCAGGGGCTTTTGACTTTGTCAGCAA
ACCGATTAATCAAAAACACCTGGAGCAGCTCTTACAAAAAGCGCTGAATAAACCGGTGGATTATTCGCATAATAATCCGA
ACGATGCACTCGAACATAAAATGCTGATTGGACAATCCATGCCAATTCAGCAATTACGCATTACCTTACAAAAAATTGCC
CGATCCCAGGCACCAGTTTTTATCACAGGGGAATCAGGCACAGGCAAGGAAGTCGTGGCCAATCTGGTACATCGCCTGAG
TAACCGCAACGAAGGTCCTTTTATTGCGATTAACTGTGGCGCCATTCCGACTGAGTTGATGGAAAGCGAACTGTTTGGGC
ATAAGAAAGGCAGCTTTACCGGCGCTGCTCAGGACAAACAGGGACTGATTCAATCTGCCCATGGTGGCAGTCTGTTTCTG
GATGAAATTGCAGAATTACCGCTTTCTATGCAGGTCAAATTGTTACGTGCCGTACAGGAAAAACGTATTCGTCCACTCGG
TTCGGATACCGAAATTGATGTGGATTTCCGTGTGATCAGTGCCACGCATCAGGATCTGGAAGCCTTGGTGCAACAAGGCA
AATTCCGTCAGGATTTATATTTCCGTATTCATGTAATGGATCTGACTTTACCGCCGCTGCGTGAACGCGGCCAGGATATT
CTGTTATTGGCCGAACACTTTATTCAGAAGATTTGCCAGGAATGGGGCATTTCCAATAAAAAACTGACCGAACGCAGCAA
AGAGTTCTTATTGGGACAATATTATCCAGGTAATGTACGTGAATTACGTAACATTATGGAACGCGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTGCAGAGTGCACCGCTGCGTCAGGCGCTAAACAGCCCTCAGGAGATGAATACG
CTCACGAGCGAGATTATTGCGACCGAAACCCTGATTGCACCTAAAAAGCTGCCTGAAGAGGGTCTAGAGCTGTATTTGGA
AAAGGTCGAAAAAGAAATTTTACTCAATGCGCTGAATCTGACCCACTGGAACCGGACACTGGCCGCCAAAAAACTCGGCA
TGTCGTTCCGTTCCCTGCGCTATCGCTTGAAAAAGTTCGGACTGGATACCGAAGAAGATGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UP47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

73.84

100

0.738
  pilR Pseudomonas aeruginosa PAK

49.024

97.257

0.477