Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JNUCC22_RS16545 Genome accession   NZ_CP076408
Coordinates   3378709..3379398 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. JNUCC-22     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3373709..3384398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC22_RS16510 (JNUCC22_16510) - 3373906..3374388 (-) 483 WP_167340892.1 flagellar protein FlgN -
  JNUCC22_RS16515 (JNUCC22_16515) flgM 3374403..3374669 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JNUCC22_RS16520 (JNUCC22_16520) - 3374739..3375158 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  JNUCC22_RS16525 (JNUCC22_16525) comFC 3375232..3375921 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  JNUCC22_RS16530 (JNUCC22_16530) - 3375927..3376211 (-) 285 WP_007407481.1 competence protein ComFB -
  JNUCC22_RS16535 (JNUCC22_16535) comFA 3376269..3377654 (-) 1386 WP_043020592.1 DEAD/DEAH box helicase Machinery gene
  JNUCC22_RS16540 (JNUCC22_16540) - 3377763..3378611 (-) 849 WP_003151387.1 DegV family protein -
  JNUCC22_RS16545 (JNUCC22_16545) degU 3378709..3379398 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JNUCC22_RS16550 (JNUCC22_16550) degS 3379475..3380638 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  JNUCC22_RS16555 (JNUCC22_16555) - 3380861..3381508 (+) 648 WP_007407485.1 YigZ family protein -
  JNUCC22_RS16560 (JNUCC22_16560) - 3381513..3382733 (+) 1221 WP_061581227.1 LCP family protein -
  JNUCC22_RS16565 (JNUCC22_16565) - 3382832..3383908 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=575085 JNUCC22_RS16545 WP_003219701.1 3378709..3379398(-) (degU) [Bacillus sp. JNUCC-22]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=575085 JNUCC22_RS16545 WP_003219701.1 3378709..3379398(-) (degU) [Bacillus sp. JNUCC-22]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGTGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1