Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   SAI1T1_RS04620 Genome accession   NC_020529
Coordinates   951066..952052 (+) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus subsp. aureus ST228     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context


Location: 946066..957052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAI1T1_RS04595 (SAI1T1_2006990) opp4B 946280..947242 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  SAI1T1_RS04600 (SAI1T1_2007000) opp4C 947254..948135 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  SAI1T1_RS04605 (SAI1T1_2007010) trpS 948177..949166 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SAI1T1_RS04610 spxA 949460..949855 (+) 396 WP_041174200.1 transcriptional regulator SpxA -
  SAI1T1_RS04615 (SAI1T1_2007020) mecA 950226..950945 (+) 720 WP_001217728.1 adaptor protein MecA -
  SAI1T1_RS04620 (SAI1T1_2007030) coiA 951066..952052 (+) 987 WP_000959282.1 competence protein CoiA family protein Machinery gene
  SAI1T1_RS04625 (SAI1T1_2007040) pepF 952100..953908 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SAI1T1_RS04630 (SAI1T1_2007050) yjbH 954368..955174 (-) 807 WP_015445788.1 protease adaptor protein YjbH -
  SAI1T1_RS04635 - 955197..955562 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  SAI1T1_RS04640 (SAI1T1_2007060) - 955666..956259 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  SAI1T1_RS04645 - 956445..956792 (+) 348 WP_001242109.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=56863 SAI1T1_RS04620 WP_000959282.1 951066..952052(+) (coiA) [Staphylococcus aureus subsp. aureus ST228]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=56863 SAI1T1_RS04620 WP_000959282.1 951066..952052(+) (coiA) [Staphylococcus aureus subsp. aureus ST228]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1

  coiA Staphylococcus aureus MW2

97.561

100

0.976


Multiple sequence alignment