Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J4A01_RS08160 Genome accession   NZ_CP071932
Coordinates   1614961..1615740 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain CAS02     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609961..1620740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4A01_RS08140 (J4A01_08060) trmFO 1610648..1611955 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J4A01_RS08145 (J4A01_08065) xerC 1612025..1612942 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  J4A01_RS08150 (J4A01_08070) hslV 1612958..1613503 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  J4A01_RS08155 (J4A01_08075) hslU 1613520..1614923 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  J4A01_RS08160 (J4A01_08080) codY 1614961..1615740 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J4A01_RS08165 (J4A01_08085) flgB 1616094..1616483 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  J4A01_RS08170 (J4A01_08090) flgC 1616483..1616935 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  J4A01_RS08175 (J4A01_08095) fliE 1616946..1617266 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  J4A01_RS08180 (J4A01_08100) fliF 1617309..1618919 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  J4A01_RS08185 (J4A01_08105) fliG 1618932..1619948 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  J4A01_RS08190 (J4A01_08110) fliH 1619941..1620696 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=549230 J4A01_RS08160 WP_003154263.1 1614961..1615740(+) (codY) [Bacillus amyloliquefaciens strain CAS02]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=549230 J4A01_RS08160 WP_003154263.1 1614961..1615740(+) (codY) [Bacillus amyloliquefaciens strain CAS02]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471