Detailed information NTG0548252

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: J4N41_RS12660
• Genome accession: NZ_CP071845
• Coordinates: 2697508..2700894 (+)
• Length: 1128 a.a.
• NCBI ID: WP_252035320.1
• Uniprot ID: A0A9Q8XG39
• Organism: Vibrio sp. SCSIO 43139
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2692508..2705894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N41_RS12640 (J4N41_12570)	erpA	2692979..2693320 (-)	342	WP_239837774.1	iron-sulfur cluster insertion protein ErpA	-
J4N41_RS12645 (J4N41_12575)	hemL	2693576..2694868 (+)	1293	WP_239875155.1	glutamate-1-semialdehyde 2,1-aminomutase	-
J4N41_RS12650 (J4N41_12580)	-	2695130..2696215 (+)	1086	WP_239837776.1	AI-2E family transporter	-
J4N41_RS12655 (J4N41_12585)	rsmC	2696293..2697315 (+)	1023	WP_252035319.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
J4N41_RS12660 (J4N41_12590)	chiS	2697508..2700894 (+)	3387	WP_252035320.1	response regulator	Regulator
J4N41_RS12665 (J4N41_12595)	-	2701580..2703262 (+)	1683	WP_239865205.1	ABC transporter substrate-binding protein	-
J4N41_RS12670 (J4N41_12600)	-	2703434..2704420 (+)	987	WP_239865206.1	ABC transporter permease	-
J4N41_RS12675 (J4N41_12605)	-	2704423..2705448 (+)	1026	WP_239865207.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127364.07 Da
• Isoelectric Point: 5.9081

>NTDB_id=548252 J4N41_RS12660 WP_252035320.1 2697508..2700894(+) (chiS) [Vibrio sp. SCSIO 43139]
MFKLYRKQKFKRLQHTLMLAFLVLSITPLTIIAIFFLQSHTKDLQEQSTSHLLSVRDSKQQQVVDYMYAKESEVMGFVRS
ELAYASGGRFYGLVNAFRSLGLDIEQARDYAQRRYIQGSGDQIKTSILPQSKVYSGTERYRLLHKRYHRAYLELLKRSDF
DDVLLVDLEGNVTYSIYKHDNYGTNLLTGRFRDSNLGKTFHKLKTQVTEKRKTNEDYTPVIISDFEMDKGKPVAWLGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNNASAMKTLLVGADHRSRTMAYEQEDIDKSREVVDLALSGRTEVGTYINTVGEA
TIAAYSPISFKGVEWAIVVEVPEKEAFARVNQLETLFIFAMLCAIVLVVAASHYLSNFITAPLLKLTWAAEKVSAGDLDT
DIINTERKDEIGRLAVSFERMQRSIRDKMQLIKQQNEELESNLKLIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPITASHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDIETRAVDISGATRLVLELSSHLVGNKPIRI
INQVPTDPLWVSADPQRLEQVLYNLVGNAIKYTSEGKIVISATQVDDNIRVQVVDTGQGIPADQLEHIFEPLIQAGSDSS
RYRQGAGLGLSISRQLIDLMQGTLYVSSQPMVGTTFSFTLPIASVEQIAQINDIENAHFVAPESNNLELIESSNLPENPE
GPLLLIVDDEPVNLRVLDSFLRLEGYRVRTANNGEEAIGSVREEKPELLLLDIMMPGMSGYQVCETLRQDYDHAQLPVIM
LTALNQPDDRVRGFEAGANDYLSKPFNKQELAARITAHLTASKAEQRRIENQQLQNELKQRAMVEASLLETQGRLLEQLE
SAPEAIICVRDDNKVRFTNDAASRLFKRTTEQLRRSSADELIAPKYLNVEQPHYCGVIDIYVEDVRQHLSADILKLPEGS
GLKSMYIFDVGGGVNAARITNLETAIEALSSYAFEGDKAKLQELKELGGEFTRLADRVTTDNKSKQEIMREVLVDSMTSA
LNYWESVTGQSKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSLEYILEHCKEMSPERTHIENLRD
KLQHLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=548252 J4N41_RS12660 WP_252035320.1 2697508..2700894(+) (chiS) [Vibrio sp. SCSIO 43139]
ATGTTTAAGTTGTATCGAAAACAAAAATTCAAGCGCCTGCAACATACTTTGATGCTAGCGTTTTTGGTGCTCAGCATTAC
CCCTCTCACCATTATCGCTATCTTCTTTTTACAATCTCACACCAAAGATCTGCAAGAACAAAGCACTTCGCACTTGCTCT
CAGTACGCGACAGCAAACAGCAACAAGTCGTCGATTATATGTATGCAAAAGAATCTGAAGTCATGGGGTTCGTTCGTTCA
GAATTGGCTTATGCGAGCGGTGGACGCTTTTATGGATTGGTCAATGCTTTTCGTAGCTTAGGGTTAGATATTGAACAAGC
ACGTGACTACGCCCAACGACGTTATATTCAAGGTTCAGGCGATCAAATAAAAACATCCATTCTTCCTCAGTCTAAGGTTT
ATAGTGGTACTGAACGCTACCGCCTACTGCATAAACGCTACCATCGTGCTTACCTAGAGCTTCTCAAACGCTCTGACTTT
GACGACGTCCTCCTAGTTGATTTAGAAGGTAATGTCACCTATTCGATCTACAAACACGATAACTACGGTACTAACCTCCT
CACTGGTCGTTTCCGCGATAGCAACCTAGGCAAAACTTTCCATAAGCTCAAAACTCAAGTCACCGAAAAGCGTAAGACCA
ATGAAGATTATACCCCTGTTATCATTTCTGATTTTGAAATGGATAAAGGGAAACCCGTTGCTTGGCTAGGTGCGCCCATA
ATTCAGCAAGGTTACCTCCATAGCTATGCCATGTTCCGCTTACCGAATAATGGCATCACTAAGCTGATCGCTGATACCAA
CAATGCTTCAGCTATGAAAACCTTGTTGGTAGGTGCCGACCATCGTTCACGCACCATGGCTTATGAGCAAGAAGACATCG
ACAAAAGTCGCGAAGTCGTAGACTTAGCGCTATCAGGAAGAACGGAAGTAGGTACTTACATCAATACAGTTGGAGAAGCG
ACTATTGCCGCTTACAGCCCGATATCTTTCAAAGGTGTAGAATGGGCAATTGTGGTTGAAGTTCCAGAAAAAGAAGCCTT
TGCTCGAGTGAATCAGCTCGAAACCCTCTTCATCTTCGCCATGTTATGTGCAATTGTACTGGTAGTCGCGGCATCGCATT
ACTTATCCAACTTTATTACCGCACCGCTTCTTAAGTTGACTTGGGCTGCAGAGAAAGTCTCAGCTGGCGACCTTGACACC
GATATCATCAATACTGAGCGTAAAGATGAAATTGGTCGTCTCGCGGTGAGCTTTGAACGTATGCAACGCTCCATCCGTGA
CAAAATGCAGCTCATCAAACAGCAAAATGAAGAACTGGAAAGCAATCTAAAACTGATTCAGAAGCAAAATGATGAATTAC
AGCTAGCCAACAAACTCAAAGACGAGTTTCTTGCCACAACTTCCCATGAATTACGCACGCCTTTGCATGGCATGGTTGGG
ATTGCCGAAGCCCTGATTTCAGGTGCGAATGGCCCCATCACCGCCAGCCACAAATATCAACTTGATATCATCATCAGTAG
TGGTCAAAGGCTGGCAACCTTAGTCGATGATTTACTTGATTATCACAAAATGCGTTATGGTAATCTGGATATCGAAACCC
GCGCAGTGGACATTTCTGGCGCAACACGATTGGTTTTGGAGCTGTCTTCTCACCTTGTCGGTAACAAGCCAATTCGCATT
ATCAACCAAGTTCCTACCGATCCTCTTTGGGTCAGTGCGGATCCACAACGTCTTGAGCAGGTACTGTATAACTTGGTTGG
CAATGCCATTAAGTACACCAGTGAAGGCAAAATCGTCATATCTGCCACTCAGGTTGATGATAATATCCGCGTACAAGTTG
TCGATACTGGCCAAGGTATACCAGCCGATCAACTGGAACATATCTTTGAGCCACTCATTCAAGCGGGTAGCGACAGCAGC
CGCTATCGACAAGGGGCAGGGTTAGGCCTATCCATTAGCCGACAGTTAATTGATTTGATGCAAGGTACGCTCTATGTGAG
CAGCCAGCCAATGGTCGGCACCACTTTCAGCTTCACTCTACCAATCGCATCAGTAGAGCAGATCGCTCAAATCAACGATA
TTGAGAACGCTCACTTCGTTGCACCGGAGAGCAATAATCTTGAACTCATAGAGAGTTCAAATTTGCCTGAAAACCCCGAA
GGGCCATTGTTATTGATTGTGGATGACGAACCGGTCAACCTACGTGTGTTAGACAGCTTCCTCCGTTTAGAAGGTTACCG
AGTACGTACGGCTAACAATGGGGAAGAAGCGATTGGCTCAGTTCGAGAAGAGAAGCCCGAACTTTTATTGCTCGATATCA
TGATGCCGGGTATGAGCGGCTATCAAGTGTGCGAAACGCTTCGACAAGATTACGACCACGCTCAATTACCTGTCATTATG
CTGACTGCATTAAATCAGCCTGACGATCGTGTACGTGGTTTTGAAGCCGGAGCGAACGATTACTTATCAAAGCCATTCAA
TAAACAGGAACTCGCCGCTCGAATAACCGCACACTTAACCGCCAGTAAGGCGGAGCAGCGCAGAATTGAAAATCAACAAT
TACAAAATGAGCTTAAACAGCGCGCCATGGTTGAAGCTAGCCTGCTGGAAACCCAAGGACGATTACTAGAACAGTTAGAG
TCTGCCCCAGAAGCTATTATCTGTGTGCGTGATGATAATAAAGTCCGTTTCACCAATGACGCGGCCTCAAGACTATTTAA
GCGCACAACCGAGCAGCTTAGACGCTCCAGCGCCGATGAACTTATCGCACCCAAATACCTTAATGTAGAACAGCCGCATT
ATTGTGGAGTCATTGATATATACGTGGAAGATGTTCGTCAGCATTTATCTGCGGATATTCTAAAGCTTCCCGAGGGATCT
GGGCTGAAATCCATGTATATTTTCGATGTCGGTGGTGGTGTGAATGCAGCACGCATTACCAATCTTGAAACAGCCATTGA
AGCGCTTTCCAGCTATGCCTTCGAAGGCGACAAAGCCAAACTTCAGGAATTAAAAGAACTCGGAGGTGAGTTCACACGCT
TGGCCGACCGCGTCACAACGGATAATAAGTCCAAACAGGAAATTATGCGTGAAGTATTGGTCGATTCCATGACAAGTGCC
CTGAATTACTGGGAAAGTGTCACGGGCCAAAGTAAGTTTGCATTTGCAGAGCAAAGTGGTTTGTGGCGAGTGTACCTTGA
CCGCAGTACATTACAAACTCGAACTCTAGATAAATATCTACGAGTCGAGACGTTGCCTAAAACACCTCGCTGGCGAACCG
TGTTGAGCTCATTAGAGTACATTTTGGAACACTGTAAAGAGATGAGCCCTGAGCGAACCCATATTGAAAACCTTCGTGAC
AAGCTTCAACACCTTCTCACCAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (725-835)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• HAMP domain (HAMP) (375-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	78.901	100	0.789