Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JNE45_RS11395 Genome accession   NZ_CP069061
Coordinates   2249673..2250008 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244673..2255008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS11375 (JNE45_11375) gcvT 2245151..2246248 (-) 1098 WP_203128608.1 glycine cleavage system aminomethyltransferase GcvT -
  JNE45_RS11380 (JNE45_11380) - 2246810..2248480 (+) 1671 WP_144471086.1 DEAD/DEAH box helicase -
  JNE45_RS11385 (JNE45_11385) - 2248495..2249292 (+) 798 WP_111292279.1 YqhG family protein -
  JNE45_RS11390 (JNE45_11390) - 2249475..2249639 (+) 165 WP_095408995.1 anti-repressor SinI family protein -
  JNE45_RS11395 (JNE45_11395) sinR 2249673..2250008 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  JNE45_RS11400 (JNE45_11400) tasA 2250076..2250876 (-) 801 WP_111292280.1 biofilm matrix protein TasA -
  JNE45_RS11405 (JNE45_11405) sipW 2250931..2251503 (-) 573 WP_203128609.1 signal peptidase I SipW -
  JNE45_RS11410 (JNE45_11410) tapA 2251556..2252083 (-) 528 WP_203128610.1 amyloid fiber anchoring/assembly protein TapA -
  JNE45_RS11415 (JNE45_11415) - 2252383..2252661 (+) 279 WP_223251017.1 DUF3889 domain-containing protein -
  JNE45_RS11420 (JNE45_11420) - 2252695..2252889 (-) 195 WP_203128611.1 YqzE family protein -
  JNE45_RS11425 (JNE45_11425) - 2252949..2253332 (-) 384 WP_203128612.1 competence type IV pilus minor pilin ComGG -
  JNE45_RS11430 (JNE45_11430) comGF 2253329..2253856 (-) 528 WP_186318660.1 competence type IV pilus minor pilin ComGF -
  JNE45_RS19405 comGE 2253768..2254082 (-) 315 WP_111292285.1 competence type IV pilus minor pilin ComGE -
  JNE45_RS11435 (JNE45_11435) comGD 2254066..2254512 (-) 447 WP_197198255.1 competence type IV pilus minor pilin ComGD -
  JNE45_RS11440 (JNE45_11440) comGC 2254505..2254798 (-) 294 WP_048239211.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=532052 JNE45_RS11395 WP_024422969.1 2249673..2250008(+) (sinR) [Bacillus safensis strain F6]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=532052 JNE45_RS11395 WP_024422969.1 2249673..2250008(+) (sinR) [Bacillus safensis strain F6]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946