Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JM955_RS22020 Genome accession   NZ_CP068717
Coordinates   4357690..4358436 (-) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus cereus strain CH     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4352690..4363436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM955_RS22000 dnaG 4353451..4355247 (-) 1797 WP_000528221.1 DNA primase -
  JM955_RS22005 - 4355329..4355472 (-) 144 WP_000479733.1 hypothetical protein -
  JM955_RS22010 - 4356108..4356920 (-) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  JM955_RS22015 - 4356950..4357582 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  JM955_RS22020 recO 4357690..4358436 (-) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  JM955_RS22025 - 4358470..4358613 (-) 144 WP_000883924.1 YqzL family protein -
  JM955_RS22030 era 4358790..4359695 (-) 906 WP_001080230.1 GTPase Era -
  JM955_RS22035 - 4359688..4360086 (-) 399 WP_001086285.1 cytidine deaminase -
  JM955_RS22040 - 4360186..4360539 (-) 354 WP_000715464.1 diacylglycerol kinase family protein -
  JM955_RS22045 ybeY 4360536..4361006 (-) 471 WP_000054685.1 rRNA maturation RNase YbeY -
  JM955_RS22050 - 4361003..4363147 (-) 2145 WP_063548656.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=530655 JM955_RS22020 WP_000487009.1 4357690..4358436(-) (recO) [Bacillus cereus strain CH]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=530655 JM955_RS22020 WP_000487009.1 4357690..4358436(-) (recO) [Bacillus cereus strain CH]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552