Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilS   Type   Regulator
Locus tag   JFY49_RS01460 Genome accession   NZ_CP067019
Coordinates   318387..319952 (-) Length   521 a.a.
NCBI ID   WP_086195177.1    Uniprot ID   A0A241VE46
Organism   Acinetobacter sp. CS-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 313387..324952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS01440 (JFY49_01440) - 314562..315740 (+) 1179 WP_200223534.1 S41 family peptidase -
  JFY49_RS01445 (JFY49_01445) - 315766..315900 (-) 135 Protein_277 helix-turn-helix domain-containing protein -
  JFY49_RS01455 (JFY49_01455) - 317051..318367 (-) 1317 Protein_279 sigma-54-dependent transcriptional regulator -
  JFY49_RS01460 (JFY49_01460) pilS 318387..319952 (-) 1566 WP_086195177.1 sensor histidine kinase Regulator
  JFY49_RS01465 (JFY49_01465) - 319980..320615 (-) 636 WP_086195178.1 response regulator -
  JFY49_RS01470 (JFY49_01470) - 320836..321882 (+) 1047 WP_143222643.1 serine hydrolase -
  JFY49_RS01475 (JFY49_01475) thrC 321985..323124 (-) 1140 WP_086195181.1 threonine synthase -
  JFY49_RS01480 (JFY49_01480) - 323181..324485 (-) 1305 WP_086195182.1 homoserine dehydrogenase -

Sequence


Protein


Download         Length: 521 a.a.        Molecular weight: 59373.14 Da        Isoelectric Point: 6.6628

>NTDB_id=524458 JFY49_RS01460 WP_086195177.1 318387..319952(-) (pilS) [Acinetobacter sp. CS-2]
MTQNSYTLEFNQYHLGIWYSTYRLIIATSLLLIFLLTYQRLSLDYHYQQLYLYVLIGYVSASFIQLIILKSIRFKTAQQL
PLLFVVDVIALSLLTLAVDGPNLQLSLLFVITIFAASLLLDAQKALIITLIAVISVIYQLFLGSIFDFSSLNNIGNSAIL
AFLFLVVYGSGQIAVKRFQLLENLNFSQSLELNRLQNLNRYILEQIELGYLVLDENCHIVLSNPAACLLLGIPPLYAYDK
YPLYKAQPDLFELLKFDQLRDGEKFQFESQLSHYHMHIEVQKLMVPQQTLTLLVLQDATKLNQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANELLSDSDPHQQAVLSRMIAKQTQRIDRIVQDTLNMVRNKETHPSTIELKQFIPLLILEDLADIAP
QIKYTVQSKIFVHFDEAQLRQVLINLIRNAIRHNAPEHSHIELNVYLHDNNVRIDVRDFGAGVASKDLAYLFQPFFSTEI
TGTGLGLYLSHSFCEANQAKLNYVKQEQGACFRIECLQVAL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=524458 JFY49_RS01460 WP_086195177.1 318387..319952(-) (pilS) [Acinetobacter sp. CS-2]
ATGACGCAAAATAGCTATACTTTAGAGTTTAACCAATATCATTTAGGTATTTGGTATAGCACCTATAGACTCATTATTGC
GACCAGTCTTCTGCTGATTTTCTTACTCACGTATCAGCGCTTAAGTCTAGATTACCACTATCAGCAACTTTATCTTTACG
TGCTAATCGGCTACGTATCGGCAAGTTTTATCCAGTTAATCATACTCAAAAGCATACGCTTTAAAACTGCCCAGCAACTC
CCGCTGTTATTTGTTGTCGATGTCATTGCTTTAAGCTTGCTCACCCTCGCGGTAGATGGCCCGAACCTGCAATTGAGTTT
GCTGTTTGTGATTACTATCTTCGCGGCCTCGTTATTACTTGATGCCCAAAAGGCTTTGATCATTACCCTGATTGCCGTGA
TCAGTGTGATTTATCAGCTTTTTTTAGGCAGTATTTTTGATTTTTCTTCACTGAATAATATTGGCAACAGTGCGATATTG
GCTTTTCTGTTTTTAGTGGTGTATGGCAGTGGGCAAATTGCAGTAAAACGCTTTCAACTGCTTGAAAATTTAAATTTTTC
GCAGTCTTTGGAATTAAACCGGCTGCAAAACCTGAATCGCTATATTCTGGAACAGATCGAACTGGGGTATCTGGTTCTAG
ATGAAAACTGTCATATTGTGCTGAGCAACCCGGCTGCCTGCCTGCTTTTAGGCATTCCTCCACTCTATGCTTATGACAAA
TATCCCTTATACAAGGCTCAGCCGGATTTATTTGAATTGCTTAAATTTGATCAACTGCGGGATGGGGAAAAATTTCAGTT
TGAGTCACAGCTCAGCCATTATCATATGCATATTGAAGTGCAAAAACTCATGGTGCCACAACAAACCCTGACATTATTGG
TATTGCAGGATGCCACCAAGCTCAATCAACGTGTACAACAATTAAAACTCGCGGCACTCGGGCAACTGTCCGCCAGTATT
GCTCATGAAATTCGCAATCCTTTAGCCGCGATTGTTCAGGCTAATGAACTTTTGAGTGATAGCGACCCGCATCAACAGGC
GGTATTGAGCCGAATGATTGCCAAGCAGACACAGCGTATTGACCGGATTGTACAAGACACGCTGAATATGGTGCGCAATA
AAGAAACCCACCCCTCAACCATTGAGTTGAAACAGTTTATTCCCCTACTAATTCTGGAAGATTTGGCTGATATTGCGCCC
CAAATTAAATATACTGTTCAAAGTAAAATTTTTGTGCATTTTGACGAGGCACAACTTCGTCAAGTGCTGATTAACCTGAT
TCGCAATGCCATTCGACATAATGCACCAGAGCATTCACATATCGAGTTGAATGTTTACTTACATGACAACAATGTGCGTA
TTGATGTTCGTGATTTTGGCGCGGGCGTTGCATCCAAGGATTTGGCTTATTTATTTCAACCTTTTTTTAGTACCGAAATC
ACAGGAACAGGTTTAGGATTGTACTTATCACATAGTTTTTGTGAAGCCAATCAGGCAAAACTGAACTATGTAAAACAAGA
ACAGGGAGCATGCTTTCGGATAGAATGCCTGCAAGTTGCTTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A241VE46

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

62.376

96.929

0.605