Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K2224_RS23320 Genome accession   NZ_CP081496
Coordinates   5271174..5272532 (-) Length   452 a.a.
NCBI ID   WP_221908459.1    Uniprot ID   -
Organism   Streptomyces sp. BHT-5-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5266174..5277532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rarA 5271174..5272532 (-) 1359 - - Machinery gene

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48021.34 Da        Isoelectric Point: 6.7882

>NTDB_id=522835 K2224_RS23320 WP_221908459.1 5271174..5272532(-) (rarA) [Streptomyces sp. BHT-5-2]
MEPDLFTAAAEDRQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVFLWGPPGIGKTTLAY
VVSQATNKRFVELSAITAGVKEVRAVIDGARRASGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLHRALTAERGLGGTVALPEDTEAHLLRIAGGDARRALTALEAGAGSALAKGEQE
ITLRTLEEAVDRAAVKYDRAGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPSAL
QTAVAAAQAVALIGFPEARITLSQATIALALAPKSNAAYLAIDAALADVRAGKAGPVPPHLRDSHYQGAQKLGHGKGYQY
PHDLPGGIAAQQYAPDAVHGTRYYAPTRHGAEARYADVAERVRARLRGESGD

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=522835 K2224_RS23320 WP_221908459.1 5271174..5272532(-) (rarA) [Streptomyces sp. BHT-5-2]
GTGGAGCCCGACCTGTTCACCGCCGCCGCGGAAGACCGTCAGGAGAAGGACCCCGCGGGGTCCCCTCTCGCCGTACGCAT
GCGCCCCCGCACCCTCGACGAAGTCGTCGGCCAGCAGCATCTGCTCAAGCCCGGCTCGCCGCTGCGGCGGTTGGTGGGGG
AGGGCAGCGGTGGACCGGCCGGCCCGTCGTCGGTGTTCCTGTGGGGCCCGCCCGGCATCGGCAAGACGACCCTGGCGTAC
GTCGTCAGCCAGGCGACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCCGGCGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCTCGGGGGGCTACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTGCCCGCGGTGGAGAACCGCTGGGTCACGCTGATCGCCGCCACCACCGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTCTCCCGCTCCCTGCTGCTGACCCTCGAACCGCTCACCGACGACGACCTGCGGGGCCTGCT
GCACCGCGCGTTGACCGCCGAGCGCGGGCTCGGCGGGACGGTCGCCCTCCCCGAGGACACCGAGGCCCATCTGCTGCGGA
TCGCGGGCGGTGACGCCCGGCGGGCGCTGACGGCCCTGGAGGCCGGTGCCGGTTCCGCGCTGGCCAAGGGGGAGCAGGAG
ATCACCCTCCGGACGCTGGAGGAGGCGGTCGACCGCGCCGCGGTGAAGTACGACCGGGCCGGCGACCAGCACTACGACGT
CGCCAGCGCACTGATCAAGTCCATCCGCGGTTCCGATGTGGACGCCGCGCTGCACTATCTGGCGCGGATGATCGAGGCGG
GGGAGGACCCCCGGTTCATCGCCCGCCGCCTGATGATCTCGGCGAGCGAGGACATCGGCCTGGCCGATCCGTCGGCGCTG
CAGACGGCGGTGGCCGCGGCCCAGGCGGTCGCCCTGATCGGCTTCCCCGAGGCCCGGATCACGCTGAGCCAGGCCACCAT
CGCGCTCGCCCTCGCCCCGAAGTCGAACGCCGCGTATCTGGCGATAGACGCCGCACTGGCTGACGTCCGCGCCGGCAAGG
CCGGGCCGGTGCCCCCGCATCTGCGCGACAGTCACTACCAGGGCGCCCAGAAGCTGGGCCACGGCAAGGGCTACCAGTAC
CCGCACGACCTGCCGGGCGGCATCGCGGCCCAGCAGTACGCCCCCGACGCGGTGCACGGCACGCGCTACTACGCCCCCAC
CCGGCACGGCGCCGAGGCGCGCTACGCCGATGTCGCCGAGCGGGTCCGGGCCCGGCTGCGCGGCGAGAGCGGCGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.814

95.133

0.436