Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6H55_RS16400 Genome accession   NZ_CP066024
Coordinates   3341926..3343743 (-) Length   605 a.a.
NCBI ID   WP_010749425.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_998     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3336926..3348743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H55_RS16375 (I6H55_16375) - 3337886..3338782 (-) 897 WP_010749429.1 RluA family pseudouridine synthase -
  I6H55_RS16380 (I6H55_16380) - 3338787..3339584 (-) 798 WP_174273007.1 NAD kinase -
  I6H55_RS16385 (I6H55_16385) - 3339590..3340258 (-) 669 WP_005229708.1 GTP pyrophosphokinase family protein -
  I6H55_RS16390 (I6H55_16390) - 3340455..3341030 (+) 576 WP_010749427.1 CYTH domain-containing protein -
  I6H55_RS16395 (I6H55_16395) - 3341139..3341795 (+) 657 WP_010749426.1 ClpXP adapter SpxH family protein -
  I6H55_RS16400 (I6H55_16400) pepF 3341926..3343743 (-) 1818 WP_010749425.1 oligoendopeptidase F Regulator
  I6H55_RS16405 (I6H55_16405) - 3343812..3344801 (-) 990 WP_010749424.1 competence protein CoiA -
  I6H55_RS16410 (I6H55_16410) - 3344902..3345552 (-) 651 WP_010749423.1 adaptor protein MecA -
  I6H55_RS16415 (I6H55_16415) spxA 3345705..3346103 (-) 399 WP_003127030.1 transcriptional regulator SpxA -
  I6H55_RS16420 (I6H55_16420) - 3346813..3348549 (-) 1737 WP_010749422.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69123.72 Da        Isoelectric Point: 4.6724

>NTDB_id=516544 I6H55_RS16400 WP_010749425.1 3341926..3343743(-) (pepF) [Enterococcus casseliflavus strain FDAARGOS_998]
MSETKQLPARESIPVEKTWDLTKIYADDAAFDIEFQEIQAQVKEASRYQGTLADGPQAFLAALEFVLDLSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASSLVAQVSEVVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHVLPAEQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSHGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKFDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVEKAKEALKPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEELVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=516544 I6H55_RS16400 WP_010749425.1 3341926..3343743(-) (pepF) [Enterococcus casseliflavus strain FDAARGOS_998]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATTCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGCGGCTTTTGACATAGAATTTCAAGAGATCCAAGCACAAGTCAAAGAAGCAAGTCGTTACCAAGGCACTTTAGCCG
ATGGGCCGCAAGCCTTTTTAGCAGCTTTAGAATTTGTCTTAGATCTTTCTCGCCGTTTGGAGAAGCTGTATGTTTACAGT
CATTTGAAAAACGATCAAGATACCGCTAATACGACTTATCAAGGCTTATATGCGAAAGCTAGCAGTTTAGTTGCGCAAGT
AAGTGAAGTCGTTGCTTGGTTTGATCCTGAGCTATTGACAATGTCTGATGAAACGATTTGGGGCTATTTCGATCAAGAGC
CGAAACTAGCTGTTTATCGTCATATGATCGAAAAAACCATCAACGAGCGTCCACATGTCTTGCCAGCGGAGCAAGAAGCG
TTATTAGCTGGTGCTGGCGAAATTTTTGGGGCACCTGGCAACATTTTTTCTGTTTTAAACAATGCTGATTTGGATTTTCC
AGTAGTTGAAGACGAAAACGGGGAAAAAGTACAGTTATCTCATGGTGTATACGGTGAGTTGATGGAAAGCACGGATCGAT
CTGTCCGTGAAGCAGCCTTTAAAGGTCTTTATGGTGTCTATGAGCAATTCCGCAATACCTTTGCCCAAACATTAAGCACC
AATATCAAAGCCCATAACTTTAAAGCAAAAGCCCGCAAATTTGATTCGGCACGGCAAGCCGCTTTGAGTGCCAACCATAT
TCCTGAAAGTGTCTACGATACATTAGTGGACGTCGTCAACCAGCACCTGCCATTGTTGCATCGTTATATGGCATTAAGAA
AACGCCTATTGGCTGTCGATACGTTGCATATGTATGATGTTTATACGCCAATTTTAGGGGAAGCGCCTATTCGTTATACC
TATGAAGAAGCTGTCGAAAAAGCGAAAGAAGCGTTAAAACCATTAGGTGAAGAATACCTTGCAGTGGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGCGCGTATTCTTCTGGTGCCTATGATACGCTGC
CATATATCCTGATGAACTGGAATGATCGATTGGATCAACTCTTTACTCTTGTTCATGAAATGGGACACAGTGTGCATAGT
TACTTTACACGCAATAACCAGCCTTATGCCTATGGCGATTATTCGATCTTTTTAGCGGAAATCGCTTCAACCACCAATGA
AAATATTTTGACAGAGTATATGCTGCAGACTGAAACAGATCCACGGGTCAAAGCTTATGTCTTGAATCATTTTCTCGATG
GCTTCAAAGGAACGATTTTCCGTCAAACGCAATTTGCCGAGTTTGAACACTTCATGCACGTGGAAGATGCGAAAGGAACA
CCGTTGACCAGTGAATTCTTAAGCGAGAACTATGCCGAGTTAAATGCAAAATACTACGGACCTTCTGTTGAAAAAGATCC
TGAGATTCGTCTTGAGTGGTCACGCATTCCGCATTTCTATTACAATTACTATGTTTACCAGTATTCAACTGGATTTTCGG
CAGCTTCAGCTTTAGCGAAGAAAATCTTAGCAGGTGAACCAGATGCCTTAACTAACTATTTGAACTATTTGAAAGCTGGA
CGCAGTGATTATCCAATCGAAGTCATGAAAAAAGCGGGCGTCGATATGACAAAAGCAGATTATATTGAAGACGCGATGAA
AGTATTTGAACAACGCTTGAATGAATTGGAAGAACTTGTCAAAGAAATTGAAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.155

98.017

0.55