Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I6H71_RS08855 Genome accession   NZ_CP065980
Coordinates   1840945..1843341 (+) Length   798 a.a.
NCBI ID   WP_103209987.1    Uniprot ID   -
Organism   Staphylococcus felis strain FDAARGOS_1014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835945..1848341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H71_RS08825 (I6H71_08825) - 1836129..1836329 (+) 201 WP_103209995.1 CsbD family protein -
  I6H71_RS08830 (I6H71_08830) - 1836329..1836484 (+) 156 WP_167388997.1 hypothetical protein -
  I6H71_RS08835 (I6H71_08835) - 1836661..1837623 (-) 963 WP_232618955.1 LLM class flavin-dependent oxidoreductase -
  I6H71_RS08840 (I6H71_08840) - 1837959..1839104 (+) 1146 WP_103209992.1 cysteine desulfurase family protein -
  I6H71_RS08845 (I6H71_08845) mnmA 1839101..1840213 (+) 1113 WP_103209990.1 tRNA 2-thiouridine(34) synthase MnmA -
  I6H71_RS08850 (I6H71_08850) - 1840266..1840940 (+) 675 WP_103209989.1 tetratricopeptide repeat protein -
  I6H71_RS08855 (I6H71_08855) recD2 1840945..1843341 (+) 2397 WP_103209987.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6H71_RS08860 (I6H71_08860) alaS 1843588..1846218 (+) 2631 WP_103209986.1 alanine--tRNA ligase -
  I6H71_RS08865 (I6H71_08865) - 1846391..1846663 (+) 273 WP_103209984.1 IreB family regulatory phosphoprotein -
  I6H71_RS08870 (I6H71_08870) ruvX 1846656..1847084 (+) 429 WP_103209982.1 Holliday junction resolvase RuvX -
  I6H71_RS08875 (I6H71_08875) - 1847098..1847412 (+) 315 WP_103209980.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90437.04 Da        Isoelectric Point: 4.6036

>NTDB_id=515874 I6H71_RS08855 WP_103209987.1 1840945..1843341(+) (recD2) [Staphylococcus felis strain FDAARGOS_1014]
MENPTLLDSTYIKGNIEFILFQNSENFYTVLKVEVLESNGDFGDMATVVGFFPDIVEDETYIFHGHIVLHPRYGQQLKAE
TFQKEIPQTKDAVIAYLSSDLFKGIGKKTAESIVNTIGEDAITQILRDESVLSDVPKLSKAKQQQIAELITQNRESEQIM
IRLNELGFGAKLSMDIYQYYKADTIRIVENNPYQLVFDIRGVGFQKADQLALQLGIAPTNQDRLKAGLLYLIEEICIKQG
HTYLPESTLINEAVQLLSKNQNITIETTQIKETLTFLYEEKKLINFEENVSLPSLYYSELKSTQNLFKILSNVEMISKFD
DSDIQLQIGQIEEQNHVYYAPSQKDALENAMKHKVMLLTGGPGTGKTTVIKGIVQLYAELHGLSLDYNDYEEDEFPIALA
APTGRASKRLYESTGLEATTIHRLIGWSQETKPDDILDYEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDTGVLPRINLTEVFRQQDGSSIIELAHRMKTGLNVDITERYHDRSFIPCHAEQIPSVVDKVVKNAV
KKGYTMSDIQVLAPMYRGSAGIKKLNEVLQNILNPKHDDEHREIDFGEVKFRKGDKVLQLVNRPNDNIFNGDIGEIVGIF
WAKENDLNKDVVVVDFEGNEITFIRSDLIELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGEAEAFNIGLTTEGQTRLTYLATFLRQYFNDTDDIRESETSNDHQSIVLTEDTISKIDPMINMAKITPYDFLEIDKV

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=515874 I6H71_RS08855 WP_103209987.1 1840945..1843341(+) (recD2) [Staphylococcus felis strain FDAARGOS_1014]
GTGGAAAACCCAACATTATTAGATAGCACATATATCAAAGGGAATATCGAATTTATTTTATTTCAAAATAGCGAAAACTT
TTACACTGTTTTAAAAGTGGAAGTTCTTGAGTCAAATGGCGATTTCGGTGATATGGCTACGGTTGTTGGGTTTTTTCCAG
ACATCGTGGAAGACGAAACGTATATATTTCATGGTCATATCGTATTACATCCTCGATACGGCCAACAACTTAAAGCTGAG
ACATTTCAAAAGGAAATCCCTCAAACAAAAGATGCTGTTATTGCTTATTTATCAAGCGATTTATTCAAAGGGATAGGTAA
AAAAACAGCAGAATCAATCGTAAATACAATTGGTGAAGACGCTATTACCCAAATATTAAGAGATGAATCTGTTCTATCGG
ATGTTCCTAAATTATCTAAAGCAAAGCAACAACAAATTGCTGAACTGATTACCCAAAATCGGGAAAGCGAACAAATAATG
ATTCGCCTAAATGAACTAGGTTTCGGTGCAAAGTTATCAATGGATATTTATCAATATTATAAAGCTGACACCATCCGAAT
CGTTGAAAATAATCCGTATCAATTGGTTTTTGATATCCGAGGTGTAGGGTTTCAAAAAGCTGATCAACTTGCATTACAAC
TTGGTATAGCACCAACGAATCAAGATCGTTTGAAAGCTGGATTGCTTTATTTAATTGAAGAAATATGTATTAAACAAGGT
CATACATATCTACCTGAATCAACTCTTATCAATGAAGCGGTACAGTTATTGTCCAAAAATCAAAATATAACGATTGAAAC
AACACAAATTAAAGAAACTTTGACATTCTTATACGAAGAAAAAAAGTTAATCAACTTTGAAGAAAATGTGTCGTTACCGA
GCCTCTATTATTCTGAACTAAAAAGTACTCAAAACTTATTTAAAATTTTGAGCAATGTTGAAATGATTTCAAAATTTGAC
GATTCGGACATTCAATTACAAATTGGTCAAATCGAGGAACAAAATCATGTATACTATGCCCCTTCTCAAAAAGATGCATT
AGAAAATGCAATGAAACACAAAGTCATGTTATTAACAGGTGGGCCAGGAACAGGAAAGACTACTGTAATTAAAGGGATTG
TTCAATTATATGCAGAATTACACGGTTTATCTTTAGATTATAATGATTATGAAGAGGATGAGTTTCCGATTGCACTTGCT
GCACCGACTGGCCGTGCCTCTAAACGACTTTATGAATCTACAGGTCTTGAAGCAACTACCATTCACCGCCTTATTGGTTG
GAGTCAAGAAACAAAGCCAGACGATATTTTAGATTATGAAATCAGTGCAAAGCTTATTATTATTGATGAGATGTCAATGG
TAGATACATGGTTGTTTCATCAATTTTTATCAGCTGTGCCAATAGATGCTCAAGTGATACTTGTAGGTGATGAAGATCAA
CTCCCATCAGTTGGTCCTGGTCAAGTGTTTAAAGATTTAATTGATACAGGTGTACTACCTAGAATTAACTTAACTGAAGT
CTTCAGACAACAAGATGGTTCGAGCATTATTGAATTAGCACATCGTATGAAAACAGGACTTAACGTTGACATTACTGAAA
GATATCATGATCGCTCGTTTATTCCATGTCATGCTGAACAAATTCCTAGTGTTGTTGATAAAGTTGTAAAAAATGCTGTC
AAAAAAGGATATACGATGTCAGATATTCAGGTGTTAGCTCCGATGTACCGTGGTAGTGCTGGGATAAAAAAATTAAATGA
AGTTTTACAAAATATATTAAACCCAAAACACGATGATGAACATCGTGAAATTGATTTTGGTGAAGTAAAGTTTCGTAAAG
GGGACAAAGTGTTACAACTTGTCAACAGGCCAAACGACAATATATTCAATGGAGATATTGGAGAGATTGTTGGTATTTTT
TGGGCAAAAGAAAATGATTTGAATAAAGATGTAGTCGTAGTAGATTTTGAAGGAAATGAAATTACATTCATACGATCAGA
TTTAATTGAACTGACACATGCTTATTGCACATCAATTCATAAAGCACAAGGATCAGAATTTCCAATTGTGATTATGCCTA
TAGTTAAGCAGTATTTTCGAATGTTACAAAAACCCATACTTTACACTGGTCTTACACGCGCAAAGCAATCGCTTGTCTTT
TTAGGTGAAGCGGAGGCGTTTAACATAGGATTAACGACAGAAGGACAAACAAGGTTAACGTACTTGGCAACGTTTTTACG
ACAGTATTTTAACGATACGGATGATATACGTGAATCCGAAACATCAAATGATCATCAATCTATTGTTTTAACAGAAGACA
CTATTTCTAAGATTGATCCTATGATTAATATGGCAAAGATAACACCATATGATTTTTTAGAAATTGACAAAGTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-656)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.811

99.624

0.496