Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JBL37_RS04330 Genome accession   NZ_CP065948
Coordinates   935420..936055 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PAM68     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930420..941055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL37_RS04315 (JBL37_04320) - 931126..932370 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  JBL37_RS04320 (JBL37_04325) - 932458..932991 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  JBL37_RS04325 (JBL37_04330) comA 933122..935347 (+) 2226 WP_058342849.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JBL37_RS04330 (JBL37_04335) exbB 935420..936055 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JBL37_RS04335 (JBL37_04340) - 936052..936492 (+) 441 WP_017001503.1 biopolymer transporter ExbD -
  JBL37_RS04340 (JBL37_04345) lpxK 936492..937490 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  JBL37_RS04345 (JBL37_04350) - 937528..937713 (+) 186 WP_003091157.1 Trm112 family protein -
  JBL37_RS04350 (JBL37_04355) kdsB 937713..938477 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JBL37_RS04355 (JBL37_04360) - 938477..938941 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  JBL37_RS04360 (JBL37_04365) murB 938938..939957 (+) 1020 WP_033938226.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=515637 JBL37_RS04330 WP_003091163.1 935420..936055(+) (exbB) [Pseudomonas aeruginosa strain PAM68]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=515637 JBL37_RS04330 WP_003091163.1 935420..936055(+) (exbB) [Pseudomonas aeruginosa strain PAM68]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACTGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81