Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JAV55_RS05565 Genome accession   NZ_CP065943
Coordinates   1115814..1116392 (+) Length   192 a.a.
NCBI ID   WP_003180354.1    Uniprot ID   A0A1Y0YMJ8
Organism   Bacillus licheniformis strain H2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110814..1121392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS21955 - 1111316..1111822 (-) 507 WP_370539003.1 methyl-accepting chemotaxis protein -
  JAV55_RS21960 - 1112075..1112608 (-) 534 Protein_1043 protoglobin family protein -
  JAV55_RS05550 (JAV55_05550) - 1112715..1114265 (-) 1551 WP_044051823.1 FAD-dependent oxidoreductase -
  JAV55_RS05555 (JAV55_05555) - 1114385..1115242 (+) 858 WP_003180352.1 SDR family oxidoreductase -
  JAV55_RS05560 (JAV55_05560) - 1115308..1115541 (-) 234 WP_003180353.1 IDEAL domain-containing protein -
  JAV55_RS05565 (JAV55_05565) comK 1115814..1116392 (+) 579 WP_003180354.1 competence protein ComK Regulator
  JAV55_RS05570 (JAV55_05570) - 1116386..1116751 (-) 366 WP_003180357.1 hypothetical protein -
  JAV55_RS05575 (JAV55_05575) - 1116960..1117571 (+) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  JAV55_RS05580 (JAV55_05580) lepB 1117584..1118102 (+) 519 WP_003180360.1 signal peptidase I -
  JAV55_RS05585 (JAV55_05585) - 1118257..1120032 (-) 1776 WP_003180361.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22432.65 Da        Isoelectric Point: 8.6274

>NTDB_id=515517 JAV55_RS05565 WP_003180354.1 1115814..1116392(+) (comK) [Bacillus licheniformis strain H2]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSISSFENQVYRTAWLRTKFIDRIEGN
PMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=515517 JAV55_RS05565 WP_003180354.1 1115814..1116392(+) (comK) [Bacillus licheniformis strain H2]
ATGAGCACAGAGGATATGACAAAGGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAAATTATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTCCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCTCATCTTTCGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACAGGATTGAAGGAAAC
CCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YMJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672