Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   I6G80_RS03220 Genome accession   NZ_CP065647
Coordinates   545409..546521 (-) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540409..551521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS03205 (I6G80_03205) gyrA 540517..542985 (-) 2469 WP_003178095.1 DNA gyrase subunit A -
  I6G80_RS03210 (I6G80_03210) gyrB 543176..545089 (-) 1914 WP_009330043.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  I6G80_RS03215 (I6G80_03215) remB 545149..545391 (-) 243 WP_003178090.1 extracellular matrix regulator RemB -
  I6G80_RS03220 (I6G80_03220) recF 545409..546521 (-) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  I6G80_RS03225 (I6G80_03225) yaaA 546538..546753 (-) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  I6G80_RS03230 (I6G80_03230) dnaN 546921..548057 (-) 1137 WP_003178080.1 DNA polymerase III subunit beta -
  I6G80_RS03235 (I6G80_03235) dnaA 548234..549574 (-) 1341 WP_003178077.1 chromosomal replication initiator protein DnaA -
  I6G80_RS03240 (I6G80_03240) rpmH 550214..550348 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  I6G80_RS03245 (I6G80_03245) rnpA 550433..550792 (+) 360 WP_003178055.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=512508 I6G80_RS03220 WP_003178089.1 545409..546521(-) (recF) [Bacillus licheniformis strain FDAARGOS_923]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=512508 I6G80_RS03220 WP_003178089.1 545409..546521(-) (recF) [Bacillus licheniformis strain FDAARGOS_923]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886