Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   I3K83_RS04840 Genome accession   NZ_CP065199
Coordinates   1009735..1010304 (-) Length   189 a.a.
NCBI ID   WP_031775450.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DG36     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004735..1015304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3K83_RS04820 (I3K83_04820) - 1006240..1007598 (+) 1359 WP_000021865.1 TrkH family potassium uptake protein -
  I3K83_RS04825 (I3K83_04825) - 1007737..1009248 (+) 1512 WP_000414165.1 bifunctional metallophosphatase/5'-nucleotidase -
  I3K83_RS04840 (I3K83_04840) comK/comK1 1009735..1010304 (-) 570 WP_031775450.1 competence protein ComK Regulator
  I3K83_RS04845 (I3K83_04845) - 1010514..1010732 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  I3K83_RS04850 (I3K83_04850) - 1010813..1011799 (-) 987 WP_000668818.1 lipoate--protein ligase -
  I3K83_RS04855 (I3K83_04855) - 1011998..1012174 (+) 177 WP_000214898.1 YkvS family protein -
  I3K83_RS04860 (I3K83_04860) - 1012189..1012791 (+) 603 WP_001033865.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  I3K83_RS13540 - 1013106..1013168 (+) 63 WP_228764722.1 hypothetical protein -
  I3K83_RS04870 (I3K83_04870) - 1013707..1013808 (+) 102 WP_031763719.1 hypothetical protein -
  I3K83_RS04875 (I3K83_04875) - 1013818..1014090 (+) 273 WP_001797239.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22629.88 Da        Isoelectric Point: 9.6091

>NTDB_id=507915 I3K83_RS04840 WP_031775450.1 1009735..1010304(-) (comK/comK1) [Staphylococcus aureus strain DG36]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKVETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=507915 I3K83_RS04840 WP_031775450.1 1009735..1010304(-) (comK/comK1) [Staphylococcus aureus strain DG36]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGTAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCTATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995