Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IUJ44_RS14520 Genome accession   NZ_CP064375
Coordinates   3050873..3051253 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3045873..3056253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS14490 (IUJ44_14460) kdsB 3046776..3047537 (+) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IUJ44_RS14495 (IUJ44_14465) - 3047549..3048529 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  IUJ44_RS14500 (IUJ44_14470) - 3048541..3048882 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  IUJ44_RS14505 (IUJ44_14475) - 3048900..3049673 (+) 774 WP_000497298.1 TatD family hydrolase -
  IUJ44_RS14510 (IUJ44_14480) - 3049711..3050319 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IUJ44_RS14515 (IUJ44_14485) - 3050329..3050883 (+) 555 WP_000841370.1 type II secretion system protein -
  IUJ44_RS14520 (IUJ44_14490) xcpV 3050873..3051253 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  IUJ44_RS14525 (IUJ44_14495) xcpW 3051253..3051954 (+) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IUJ44_RS14530 (IUJ44_14500) gspK 3051954..3052913 (+) 960 WP_000301461.1 type II secretion system minor pseudopilin GspK -
  IUJ44_RS14535 (IUJ44_14505) - 3053143..3053739 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  IUJ44_RS14540 (IUJ44_14510) ung 3053790..3054503 (+) 714 WP_001177525.1 uracil-DNA glycosylase -
  IUJ44_RS14545 (IUJ44_14515) - 3054500..3055624 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  IUJ44_RS14550 (IUJ44_14520) tadA 3055631..3056134 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=501339 IUJ44_RS14520 WP_000836911.1 3050873..3051253(+) (xcpV) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=501339 IUJ44_RS14520 WP_000836911.1 3050873..3051253(+) (xcpV) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1