Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IRB21_RS14055 Genome accession   NZ_CP064089
Coordinates   2717625..2717960 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain N435-3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2712625..2722960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS14035 gcvT 2713101..2714198 (-) 1098 WP_035390798.1 glycine cleavage system aminomethyltransferase GcvT -
  IRB21_RS14040 - 2714760..2716430 (+) 1671 WP_242730658.1 SNF2-related protein -
  IRB21_RS14045 - 2716445..2717242 (+) 798 WP_007501215.1 YqhG family protein -
  IRB21_RS14050 - 2717427..2717591 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  IRB21_RS14055 sinR 2717625..2717960 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  IRB21_RS14060 - 2718028..2718828 (-) 801 WP_008342195.1 TasA family protein -
  IRB21_RS14065 - 2718887..2719459 (-) 573 WP_017357979.1 signal peptidase I -
  IRB21_RS14070 tapA 2719509..2720036 (-) 528 WP_073413951.1 amyloid fiber anchoring/assembly protein TapA -
  IRB21_RS14075 - 2720289..2720615 (+) 327 WP_242730660.1 DUF3889 domain-containing protein -
  IRB21_RS14080 - 2720650..2720838 (-) 189 WP_008360237.1 YqzE family protein -
  IRB21_RS14085 comGG 2720899..2721282 (-) 384 WP_242730662.1 competence type IV pilus minor pilin ComGG -
  IRB21_RS14090 comGF 2721279..2721776 (-) 498 WP_242730664.1 competence type IV pilus minor pilin ComGF -
  IRB21_RS20625 comGE 2721718..2722032 (-) 315 WP_341275286.1 competence type IV pilus minor pilin ComGE -
  IRB21_RS14095 comGD 2722016..2722462 (-) 447 WP_203085332.1 competence type IV pilus minor pilin ComGD -
  IRB21_RS14100 comGC 2722455..2722748 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=498969 IRB21_RS14055 WP_017357978.1 2717625..2717960(+) (sinR) [Bacillus altitudinis strain N435-3]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=498969 IRB21_RS14055 WP_017357978.1 2717625..2717960(+) (sinR) [Bacillus altitudinis strain N435-3]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928