Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IPV47_RS25225 Genome accession   NZ_CP063387
Coordinates   5390040..5390492 (-) Length   150 a.a.
NCBI ID   WP_031636800.1    Uniprot ID   P17837
Organism   Pseudomonas aeruginosa strain ST1076_d100blood2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5385040..5395492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV47_RS25205 (IPV47_25205) ampD 5385735..5386301 (-) 567 WP_003112844.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IPV47_RS25210 (IPV47_25210) - 5386452..5388707 (-) 2256 WP_016264271.1 DUF1631 domain-containing protein -
  IPV47_RS25215 (IPV47_25215) nadC 5388993..5389841 (+) 849 WP_003094645.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IPV47_RS25225 (IPV47_25225) pilA 5390040..5390492 (-) 453 WP_031636800.1 pilin Machinery gene
  IPV47_RS25230 (IPV47_25230) pilB 5390724..5392424 (+) 1701 WP_023094327.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IPV47_RS25235 (IPV47_25235) pilC 5392428..5393648 (+) 1221 WP_009315898.1 type 4a pilus biogenesis protein PilC Machinery gene
  IPV47_RS25240 (IPV47_25240) pilD 5393652..5394524 (+) 873 WP_003125204.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  IPV47_RS25245 (IPV47_25245) coaE 5394521..5395132 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  IPV47_RS25250 (IPV47_25250) yacG 5395129..5395329 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15743.11 Da        Isoelectric Point: 8.4742

>NTDB_id=495093 IPV47_RS25225 WP_031636800.1 5390040..5390492(-) (pilA) [Pseudomonas aeruginosa strain ST1076_d100blood2]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALATINPLKTTVEESLSRGIAGSKILIGTTASTADTTYV
GIDEKANKLGTVAVTIKDTGDGTVKFTFATGQSSPKNAGKEITLNRTAEGVWTCTSTQEEMFIPKGCNKP

Nucleotide


Download         Length: 453 bp        

>NTDB_id=495093 IPV47_RS25225 WP_031636800.1 5390040..5390492(-) (pilA) [Pseudomonas aeruginosa strain ST1076_d100blood2]
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAGCTGATGATCGTGGTTGCGATCATCGGTATCCTGGCGGCGATTGCCAT
TCCCCAGTACCAGAACTATGTGGCGCGTTCGGAAGGCGCTTCGGCGCTGGCGACGATCAACCCGTTGAAGACCACTGTTG
AAGAGTCGCTGTCGCGTGGAATTGCTGGTAGCAAAATTCTGATCGGTACTACAGCTTCTACTGCAGATACCACCTATGTA
GGTATTGATGAGAAGGCAAATAAACTTGGTACCGTAGCTGTAACTATTAAAGACACAGGCGATGGTACTGTAAAATTTAC
TTTTGCAACTGGTCAGTCCAGTCCGAAGAATGCGGGCAAGGAAATTACTTTGAATCGTACTGCTGAAGGTGTATGGACTT
GCACCTCTACTCAGGAAGAGATGTTTATTCCTAAGGGTTGTAATAAGCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P17837

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

66.447

100

0.673
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

45

100

0.48
  pilA Vibrio cholerae strain A1552

45

100

0.48
  pilA Vibrio cholerae C6706

45

100

0.48
  pilA/pilAI Pseudomonas stutzeri DSM 10701

46

100

0.46
  pilA Acinetobacter baumannii strain A118

45.27

98.667

0.447
  pilA Vibrio parahaemolyticus RIMD 2210633

42.568

98.667

0.42
  pilA/pilAII Pseudomonas stutzeri DSM 10701

43.357

95.333

0.413
  comP Acinetobacter baylyi ADP1

41.333

100

0.413
  pilA/pilA1 Eikenella corrodens VA1

39.865

98.667

0.393
  pilA2 Legionella pneumophila str. Paris

38.255

99.333

0.38
  pilA2 Legionella pneumophila strain ERS1305867

38.255

99.333

0.38