Detailed information NTG0493623

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: IMY50_RS05900
• Genome accession: NZ_CP063158
• Coordinates: 1145628..1148228 (+)
• Length: 866 a.a.
• NCBI ID: WP_000365410.1
• Uniprot ID: A0A9X9C9I9
• Organism: Bacillus cereus strain CF4-51
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1140628..1153228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMY50_RS05865 (IMY50_05865)	prsA	1141390..1142247 (-)	858	WP_001214222.1	peptidylprolyl isomerase PrsA	-
IMY50_RS05870 (IMY50_05870)	-	1142377..1142508 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
IMY50_RS05875 (IMY50_05875)	-	1142609..1143466 (+)	858	WP_000364431.1	YitT family protein	-
IMY50_RS05880 (IMY50_05880)	-	1143492..1143689 (-)	198	WP_071713726.1	DUF3813 domain-containing protein	-
IMY50_RS05885 (IMY50_05885)	-	1143690..1143830 (-)	141	WP_000516816.1	hypothetical protein	-
IMY50_RS05890 (IMY50_05890)	-	1143936..1144745 (-)	810	WP_001041231.1	Cof-type HAD-IIB family hydrolase	-
IMY50_RS05895 (IMY50_05895)	-	1145238..1145417 (+)	180	WP_000531422.1	YjzC family protein	-
IMY50_RS05900 (IMY50_05900)	clpC	1145628..1148228 (+)	2601	WP_000365410.1	ATP-dependent chaperone ClpB	Regulator
IMY50_RS05905 (IMY50_05905)	-	1148267..1148449 (-)	183	WP_001211116.1	YjzD family protein	-
IMY50_RS05910 (IMY50_05910)	-	1148606..1149340 (+)	735	WP_071713725.1	alpha/beta hydrolase	-
IMY50_RS05915 (IMY50_05915)	-	1149370..1150242 (+)	873	WP_000487723.1	NAD(P)-dependent oxidoreductase	-
IMY50_RS05920 (IMY50_05920)	comZ	1150297..1150473 (+)	177	WP_001986215.1	ComZ family protein	Regulator
IMY50_RS05925 (IMY50_05925)	fabH	1150705..1151637 (+)	933	WP_071713724.1	beta-ketoacyl-ACP synthase III	-
IMY50_RS05930 (IMY50_05930)	fabF	1151669..1152907 (+)	1239	WP_000412656.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97410.40 Da
• Isoelectric Point: 5.1572

>NTDB_id=493623 IMY50_RS05900 WP_000365410.1 1145628..1148228(+) (clpC) [Bacillus cereus strain CF4-51]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQSAESLIKKKPSVTGSGAE
VGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFARLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLEGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=493623 IMY50_RS05900 WP_000365410.1 1145628..1148228(+) (clpC) [Bacillus cereus strain CF4-51]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAAGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAAGCGCTGAAAGCTTAATTAAAAAGAAACCTTCTGTAACAGGGAGCGGTGCAGAG
GTTGGAAAATTGTATGTAACGAGCGCTCTGCAACAATTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAACTACAGGATGA
TTACATTTCAGTCGAACATGTATTGCTTGCTTTTTCCGAAGAAAAAGGCGATATAAATCAATTATTTGCAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCAGAAGTGAGAGCCGGGAAAATTGATCCTGTTATCGGCCGAGA
TAGTGAAATTCGACGCGTTATCCGCATTCTTTCACGTAAAACGAAAAACAATCCAGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAAAAGGATGTACCTGAAGGATTGAAAGATAGAACGATT
TTTGCATTAGATATGAGTGCGCTCGTAGCAGGTGCGAAATTCCGTGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGCCGCATTTTATTATTCATTGATGAACTTCATACAATCGTTGGAGCTGGTAAAACAGAAG
GTGCGATGGATGCAGGAAATATGTTAAAACCGATGCTTGCTCGTGGTGAACTGCATTGTATCGGGGCGACAACATTAGAT
GAATATCGTAAATATATTGAAAAAGATCCAGCACTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACGATTTCCATATTACGTGGATTAAAAGAACGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCGTCAGTTTTATCAGATCGATATATTTCAGATCGCTTCTTACCGGATAAAGCGATTGACCTTGTTGATGAAGCG
TGCGCAACAATTCGTACAGAAATCGATTCTATGCCGACAGAATTAGATGAAGTAACGCGTCGTATTATGCAGTTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAACGGATCGTGGTAGCCAAGAGCGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGACATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGCCGTGAATTAGAGGAAGCAGAAGGTAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
GAAAATTCCTGCAATCGAAAAAGAATTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCTAAACTTGTTGAAGGC
GAGCGTGAGAAATTACTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTATC
AGACGCGGTTCTTCGTGCGCGCGCTGGTATTAAAGACCCGAATCGTCCAATTGGTTCCTTCATTTTCTTAGGCCCTACGG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATTGACATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTAGGATATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCAGTTATTTTGTTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCACAAGGAAGAACAGTAGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTACTAGAGGGATTAGAAGAAGATGGTTCGATCAAAGAGGAATCAAGAGA
CCTTGTAATGGGGCAATTAAGAGGACATTTCCGCCCTGAATTTTTAAACCGTGTTGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGCATTGTTGATAAAATTGTAAAAGAACTACAAGGCCGTCTAGCTGACCGTCACATTACA
GTAGAATTAACAGATGCAGCAAAAGAATTTGTTGTAGAAGCTGGTTTCGATCCAATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCAAGAGAATTAATTGCAGGAACAATTACAGACAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAATGA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA lid domain (AAA_lid_9) (345-447)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.886	100	0.484
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.648	100	0.42
clpC	Lactococcus lactis subsp. cremoris KW2	47.339	82.448	0.39