Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP96_RS01260 Genome accession   NZ_CP063116
Coordinates   260309..260671 (-) Length   120 a.a.
NCBI ID   WP_197556007.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255309..265671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS01240 (INP96_01240) - 255446..255949 (-) 504 WP_070868327.1 surface-adhesin E family protein -
  INP96_RS01245 (INP96_01245) pflA 256003..256743 (-) 741 WP_049364777.1 pyruvate formate lyase 1-activating protein -
  INP96_RS01250 (INP96_01250) pflB 256873..259185 (-) 2313 WP_049364776.1 formate C-acetyltransferase -
  INP96_RS01255 (INP96_01255) focA 259241..260095 (-) 855 WP_049372705.1 formate transporter FocA -
  INP96_RS01260 (INP96_01260) comE1/comEA 260309..260671 (-) 363 WP_197556007.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP96_RS01265 (INP96_01265) - 260817..261134 (-) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  INP96_RS01270 (INP96_01270) rdgB 261173..261772 (-) 600 WP_070776201.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INP96_RS01275 (INP96_01275) - 261904..262275 (+) 372 WP_070776202.1 DUF305 domain-containing protein -
  INP96_RS01280 (INP96_01280) ispH 262324..263268 (-) 945 WP_197556008.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP96_RS01285 (INP96_01285) lspA 263265..263756 (-) 492 WP_070582686.1 signal peptidase II -
  INP96_RS01290 (INP96_01290) glmU 263873..265243 (-) 1371 WP_197556009.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13068.96 Da        Isoelectric Point: 9.6912

>NTDB_id=493004 INP96_RS01260 WP_197556007.1 260309..260671(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C146_1]
MKLMKHLFSSLFIAGAMLSTQAIAEEKTAEQAQPQTQVQQQTAVQAPSQTVQQTVSDKLNINTASVSDIQKALIGIGAKK
AEAIVQYREKHGSFTAAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=493004 INP96_RS01260 WP_197556007.1 260309..260671(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C146_1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTATTGCGGGCGCGATGTTGAGTACACAAGCAATTGCAGAAGAAAA
GACAGCAGAGCAGGCTCAACCGCAAACGCAAGTGCAGCAACAAACAGCTGTACAAGCACCATCACAAACAGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACCGCTAGCGTATCAGACATTCAAAAAGCGCTGATTGGTATTGGGGCGAAAAAA
GCAGAAGCCATTGTGCAATACCGTGAAAAACACGGTAGTTTCACTGCGGCAGAACAACTACTTGAAGTACAAGGCATTGG
TAAAGCTACGTTAGAAAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

62.393

97.5

0.608
  comEA/comE1 Glaesserella parasuis strain SC1401

50.847

98.333

0.5