Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IHV08_RS12975 Genome accession   NZ_CP062497
Coordinates   2500664..2500999 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain CV16     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2495664..2505999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS12955 (IHV08_12955) gcvT 2496256..2497344 (-) 1089 WP_015251720.1 glycine cleavage system aminomethyltransferase GcvT -
  IHV08_RS12960 (IHV08_12960) hepAA 2497786..2499459 (+) 1674 WP_004398544.1 SNF2-related protein -
  IHV08_RS12965 (IHV08_12965) yqhG 2499480..2500274 (+) 795 WP_003230200.1 YqhG family protein -
  IHV08_RS12970 (IHV08_12970) sinI 2500457..2500630 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  IHV08_RS12975 (IHV08_12975) sinR 2500664..2500999 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  IHV08_RS12980 (IHV08_12980) tasA 2501092..2501877 (-) 786 WP_192857888.1 biofilm matrix protein TasA -
  IHV08_RS12985 (IHV08_12985) sipW 2501941..2502513 (-) 573 WP_192858455.1 signal peptidase I SipW -
  IHV08_RS12990 (IHV08_12990) tapA 2502497..2503258 (-) 762 WP_181217179.1 amyloid fiber anchoring/assembly protein TapA -
  IHV08_RS12995 (IHV08_12995) yqzG 2503530..2503856 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  IHV08_RS13000 (IHV08_13000) spoIITA 2503898..2504077 (-) 180 WP_003230176.1 YqzE family protein -
  IHV08_RS13005 (IHV08_13005) comGG 2504148..2504522 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  IHV08_RS13010 (IHV08_13010) comGF 2504523..2504906 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  IHV08_RS13015 (IHV08_13015) comGE 2504932..2505279 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  IHV08_RS13020 (IHV08_13020) comGD 2505263..2505694 (-) 432 WP_181217182.1 comG operon protein ComGD Machinery gene
  IHV08_RS13025 (IHV08_13025) comGC 2505684..2505980 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=490450 IHV08_RS12975 WP_003226345.1 2500664..2500999(+) (sinR) [Bacillus subtilis strain CV16]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=490450 IHV08_RS12975 WP_003226345.1 2500664..2500999(+) (sinR) [Bacillus subtilis strain CV16]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1