Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF761_RS12845 Genome accession   NZ_CP062329
Coordinates   2615554..2615949 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2610554..2620949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF761_RS12815 (IF761_12740) - 2611815..2612219 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IF761_RS12820 (IF761_12745) - 2612555..2612647 (+) 93 WP_031824610.1 hypothetical protein -
  IF761_RS12825 (IF761_12750) - 2612779..2613012 (+) 234 WP_000384523.1 DUF1146 family protein -
  IF761_RS12830 (IF761_12755) murA 2613123..2614388 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF761_RS12835 (IF761_12760) fabZ 2614422..2614862 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF761_RS12840 (IF761_12765) - 2614920..2615360 (-) 441 WP_000846746.1 YwpF-like family protein -
  IF761_RS12845 (IF761_12770) ssb 2615554..2615949 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF761_RS12850 (IF761_12775) sceD 2616338..2617033 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  IF761_RS12855 (IF761_12780) tenA 2617420..2618109 (+) 690 WP_000396064.1 thiaminase II -
  IF761_RS12860 (IF761_12785) thiD 2618102..2618932 (+) 831 WP_000594951.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF761_RS12865 (IF761_12790) thiM 2618916..2619707 (+) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  IF761_RS12870 (IF761_12795) thiE 2619709..2620350 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=487846 IF761_RS12845 WP_000932694.1 2615554..2615949(+) (ssb) [Staphylococcus aureus strain NAS_OP_026]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=487846 IF761_RS12845 WP_000932694.1 2615554..2615949(+) (ssb) [Staphylococcus aureus strain NAS_OP_026]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992