Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IG630_RS08950 Genome accession   NZ_CP062255
Coordinates   1999165..2000199 (+) Length   344 a.a.
NCBI ID   WP_011051113.1    Uniprot ID   P0A0W4
Organism   Xanthomonas sp. WG16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1994165..2005199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG630_RS08935 (IG630_08875) - 1995660..1996154 (+) 495 WP_003481865.1 CinA family protein -
  IG630_RS08940 (IG630_08880) ubiB 1996589..1998265 (+) 1677 WP_003481867.1 2-polyprenylphenol 6-hydroxylase -
  IG630_RS08945 (IG630_08885) lexA 1998351..1998992 (+) 642 WP_005915033.1 transcriptional repressor LexA -
  IG630_RS08950 (IG630_08890) recA 1999165..2000199 (+) 1035 WP_011051113.1 recombinase RecA Machinery gene
  IG630_RS08955 (IG630_08895) recX 2000512..2001000 (+) 489 WP_003481873.1 recombination regulator RecX -
  IG630_RS08960 (IG630_08900) alaS 2001102..2003750 (+) 2649 WP_011051114.1 alanine--tRNA ligase -
  IG630_RS08965 (IG630_08905) csrA 2003890..2004102 (+) 213 WP_003481884.1 carbon storage regulator CsrA -
  IG630_RS08975 (IG630_23970) - 2004322..2004546 (-) 225 WP_109291899.1 AlpA family phage regulatory protein -
  IG630_RS08980 - 2004539..2004895 (-) 357 WP_223293164.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37166.62 Da        Isoelectric Point: 4.9759

>NTDB_id=487436 IG630_RS08950 WP_011051113.1 1999165..2000199(+) (recA) [Xanthomonas sp. WG16]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQGKDNARTYLRDNSQVATRL
EAELREKFQPAEAPREAGDDEDKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=487436 IG630_RS08950 WP_011051113.1 1999165..2000199(+) (recA) [Xanthomonas sp. WG16]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACCGCGTCATTGAGGCGGTCGAAGTCATCCCGACCGGCTCGCTGATGCTGGATATCGCCCTGGGGATCGGCG
GCCTGCCGAAGGGTCGCGTGGTCGAAATCTACGGCCCGGAATCCTCCGGCAAGACCACCTTGACCCTGCAAGCCATCGCC
GAGTGCCAGAAGAACGGCGGCACCGCTGCCTTCATCGATGCCGAGCACGCACTGGACCCGATTTATGCGGCCAAGCTGGG
CGTCAATGTCGACGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCACTGGAAATTGCCGACATGCTGGTGCGTT
CGGGTTCGGTTGATATCGTGGTGGTCGACTCGGTCGCTGCACTGACGCCGAAGGCGGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCAGGTTTGCAGGCTCGCTTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAATATCAAGCGCTCCAACACGCT
GGTGGTCTTCATCAATCAGCTGCGCATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGCCGTATCGGTGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATCCTGTATGGCGA
AGGCATCAGTCGCGAGGGCGAATTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGACAAGGCCGGCGCCTGGTACAGCT
ATGGCGATGAGCGCATCGGGCAGGGCAAGGACAACGCGCGAACCTACCTGCGCGACAACTCGCAGGTTGCGACCCGGCTG
GAAGCGGAGCTGCGTGAGAAGTTCCAACCTGCCGAAGCACCGCGTGAAGCCGGCGACGACGAAGACAAGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A0W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.349

100

0.703
  recA Pseudomonas stutzeri DSM 10701

70.326

97.965

0.689
  recA Acinetobacter baumannii D1279779

71.951

95.349

0.686
  recA Ralstonia pseudosolanacearum GMI1000

75.399

90.988

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.552

94.767

0.669
  recA Vibrio cholerae strain A1552

70.552

94.767

0.669
  recA Neisseria gonorrhoeae MS11

68.712

94.767

0.651
  recA Neisseria gonorrhoeae MS11

68.712

94.767

0.651
  recA Neisseria gonorrhoeae strain FA1090

68.712

94.767

0.651
  recA Glaesserella parasuis strain SC1401

64.826

100

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

97.093

0.613
  recA Latilactobacillus sakei subsp. sakei 23K

62.275

97.093

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.375

93.023

0.599
  recA Helicobacter pylori strain NCTC11637

62.048

96.512

0.599
  recA Helicobacter pylori 26695

61.747

96.512

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.477

0.593
  recA Streptococcus pneumoniae Rx1

60.976

95.349

0.581
  recA Streptococcus mitis SK321

60.976

95.349

0.581
  recA Streptococcus pneumoniae D39

60.976

95.349

0.581
  recA Streptococcus pneumoniae R6

60.976

95.349

0.581
  recA Streptococcus pneumoniae TIGR4

60.976

95.349

0.581
  recA Streptococcus mitis NCTC 12261

60.671

95.349

0.578
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.93

0.558