Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JNUCC41_RS25930 Genome accession   NZ_CP062163
Coordinates   5368474..5368773 (-) Length   99 a.a.
NCBI ID   WP_286182430.1    Uniprot ID   -
Organism   Brevibacillus sp. JNUCC-41     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5363474..5373773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC41_RS25895 (JNUCC41_25895) - 5364080..5365768 (+) 1689 WP_192205485.1 SNF2-related protein -
  JNUCC41_RS25900 (JNUCC41_25900) - 5365746..5366546 (+) 801 WP_192205487.1 YqhG family protein -
  JNUCC41_RS25905 (JNUCC41_25905) - 5366590..5366775 (-) 186 WP_063233067.1 YqzE family protein -
  JNUCC41_RS25910 (JNUCC41_25910) comGG 5366892..5367278 (-) 387 WP_192205490.1 competence type IV pilus minor pilin ComGG -
  JNUCC41_RS25915 (JNUCC41_25915) comGF 5367271..5367750 (-) 480 WP_192208338.1 competence type IV pilus minor pilin ComGF -
  JNUCC41_RS25920 (JNUCC41_25920) - 5367698..5368036 (-) 339 WP_192205492.1 hypothetical protein -
  JNUCC41_RS25925 (JNUCC41_25925) comGD 5368023..5368466 (-) 444 WP_192205494.1 competence type IV pilus minor pilin ComGD -
  JNUCC41_RS25930 (JNUCC41_25930) comGC 5368474..5368773 (-) 300 WP_286182430.1 competence type IV pilus major pilin ComGC Machinery gene
  JNUCC41_RS25935 (JNUCC41_25935) comGB 5368863..5369897 (-) 1035 WP_192205496.1 competence type IV pilus assembly protein ComGB -
  JNUCC41_RS25940 (JNUCC41_25940) comGA 5369881..5370957 (-) 1077 WP_192208340.1 competence type IV pilus ATPase ComGA Machinery gene
  JNUCC41_RS25945 (JNUCC41_25945) - 5371059..5371439 (-) 381 WP_192205498.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  JNUCC41_RS25950 (JNUCC41_25950) - 5371655..5372350 (+) 696 WP_192205500.1 helix-turn-helix domain-containing protein -
  JNUCC41_RS25955 (JNUCC41_25955) - 5372436..5372678 (+) 243 WP_076365317.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10768.52 Da        Isoelectric Point: 4.4796

>NTDB_id=486685 JNUCC41_RS25930 WP_286182430.1 5368474..5368773(-) (comGC) [Brevibacillus sp. JNUCC-41]
MMNEHGFTLIEMLIVLLVISILLIITIPNITKNQSTIQSKGCEAFVKMAQAQVQAYEIDNAKLPGSIGELESQGYLKQTS
CPNGDDISLDSKGKVTVVE

Nucleotide


Download         Length: 300 bp        

>NTDB_id=486685 JNUCC41_RS25930 WP_286182430.1 5368474..5368773(-) (comGC) [Brevibacillus sp. JNUCC-41]
ATGATGAATGAACATGGTTTTACACTAATTGAAATGCTTATTGTTTTACTGGTAATATCCATCCTTTTGATTATAACGAT
CCCCAATATCACGAAGAACCAATCAACGATCCAGTCTAAAGGATGTGAAGCATTCGTGAAGATGGCCCAAGCACAGGTAC
AGGCTTATGAGATCGACAATGCTAAACTGCCCGGAAGTATCGGTGAATTGGAAAGTCAAGGCTATCTCAAACAGACATCC
TGTCCTAATGGGGATGATATTAGTTTGGATAGTAAAGGAAAGGTAACGGTCGTTGAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

56.322

87.879

0.495
  comGC Staphylococcus aureus MW2

47.727

88.889

0.424
  comGC Staphylococcus aureus N315

47.727

88.889

0.424