Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC764_RS16640 Genome accession   NZ_CP061683
Coordinates   3448300..3448710 (-) Length   136 a.a.
NCBI ID   WP_077169023.1    Uniprot ID   A0A7H2TZ88
Organism   Acinetobacter seifertii strain AS5     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3443300..3453710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC764_RS16610 (IC764_16610) - 3443387..3443656 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  IC764_RS16615 (IC764_16615) rapZ 3443653..3444504 (-) 852 WP_019458134.1 RNase adapter RapZ -
  IC764_RS16620 (IC764_16620) panC 3444527..3445375 (-) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  IC764_RS16625 (IC764_16625) panB 3445379..3446188 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC764_RS16630 (IC764_16630) folK 3446232..3446714 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC764_RS16635 (IC764_16635) pcnB 3446711..3448174 (-) 1464 WP_068934874.1 polynucleotide adenylyltransferase PcnB -
  IC764_RS16640 (IC764_16640) comEA 3448300..3448710 (-) 411 WP_077169023.1 ComEA family DNA-binding protein Machinery gene
  IC764_RS16645 (IC764_16645) mazG 3448679..3449485 (-) 807 WP_077169024.1 nucleoside triphosphate pyrophosphohydrolase -
  IC764_RS16650 (IC764_16650) - 3449598..3450371 (+) 774 WP_077169025.1 SDR family oxidoreductase -
  IC764_RS16655 (IC764_16655) - 3450417..3452723 (-) 2307 WP_004698623.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15597.79 Da        Isoelectric Point: 10.4093

>NTDB_id=484171 IC764_RS16640 WP_077169023.1 3448300..3448710(-) (comEA) [Acinetobacter seifertii strain AS5]
MRYSMRHWKNNCFILMMLSLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNISKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=484171 IC764_RS16640 WP_077169023.1 3448300..3448710(-) (comEA) [Acinetobacter seifertii strain AS5]
ATGCGATACAGCATGAGACATTGGAAAAATAATTGCTTTATTTTAATGATGTTGTCCTTAGGAGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGCCTTCTCATTCTTATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGATTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGGCCTGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2TZ88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.235

100

0.882
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

43.382

100

0.434