Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM04240196_RS15030 Genome accession   NC_017515
Coordinates   2112763..2113227 (-) Length   154 a.a.
NCBI ID   WP_162467384.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2102175..2113062 2112763..2113227 flank -299


Gene organization within MGE regions


Location: 2102175..2113227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS10865 (NMBM04240196_1944) - 2102175..2103818 (+) 1644 WP_002223143.1 AAA family ATPase -
  NMBM04240196_RS10870 (NMBM04240196_1945) - 2103862..2104044 (+) 183 WP_002223144.1 hypothetical protein -
  NMBM04240196_RS10875 (NMBM04240196_1946) lpt3 2104256..2105833 (+) 1578 WP_002223145.1 lipooligosaccharide phosphoethanolamine transferase -
  NMBM04240196_RS15850 - 2105935..2107113 (+) 1179 Protein_2013 DUF3418 domain-containing protein -
  NMBM04240196_RS10880 (NMBM04240196_1947) - 2107114..2109318 (+) 2205 WP_306769987.1 DUF3418 domain-containing protein -
  NMBM04240196_RS10885 (NMBM04240196_1948) - 2109351..2110442 (-) 1092 WP_002223147.1 XRE family transcriptional regulator -
  NMBM04240196_RS10890 (NMBM04240196_1949) - 2110458..2111102 (-) 645 WP_002223148.1 hypothetical protein -
  NMBM04240196_RS15305 (NMBM04240196_1951) - 2111459..2111611 (+) 153 WP_002223150.1 hypothetical protein -
  NMBM04240196_RS15640 - 2111742..2112065 (+) 324 WP_202052896.1 5'-nucleotidase -
  NMBM04240196_RS10910 (NMBM04240196_1953) comP 2112226..2112675 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMBM04240196_RS15030 comE 2112763..2113227 (-) 465 WP_162467384.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16501.79 Da        Isoelectric Point: 10.9585

>NTDB_id=48031 NMBM04240196_RS15030 WP_162467384.1 2112763..2113227(-) (comE) [Neisseria meningitidis M04-240196]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=48031 NMBM04240196_RS15030 WP_162467384.1 2112763..2113227(-) (comE) [Neisseria meningitidis M04-240196]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment