Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMBM04240196_RS02310 Genome accession   NC_017515
Coordinates   420814..422310 (+) Length   498 a.a.
NCBI ID   WP_014581352.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 415814..427310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS14820 - 418214..418381 (+) 168 WP_009346312.1 hypothetical protein -
  NMBM04240196_RS02295 (NMBM04240196_0409) putP 418471..419997 (-) 1527 WP_002227025.1 sodium/proline symporter PutP -
  NMBM04240196_RS02305 (NMBM04240196_0410) - 420480..420800 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  NMBM04240196_RS02310 (NMBM04240196_0411) comM 420814..422310 (+) 1497 WP_014581352.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMBM04240196_RS02315 (NMBM04240196_0412) ftsN 422416..423261 (+) 846 WP_002226072.1 cell division protein FtsN -
  NMBM04240196_RS02320 (NMBM04240196_0413) dsbA1 423264..423908 (+) 645 WP_002226073.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBM04240196_RS02325 (NMBM04240196_0414) - 423941..424762 (+) 822 WP_002226074.1 undecaprenyl-diphosphate phosphatase -
  NMBM04240196_RS02340 (NMBM04240196_0417) - 425343..426560 (-) 1218 WP_014581353.1 class I SAM-dependent methyltransferase -
  NMBM04240196_RS02345 (NMBM04240196_0418) mraZ 426839..427294 (+) 456 WP_002212482.1 division/cell wall cluster transcriptional repressor MraZ -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53628.75 Da        Isoelectric Point: 7.0035

>NTDB_id=47994 NMBM04240196_RS02310 WP_014581352.1 420814..422310(+) (comM) [Neisseria meningitidis M04-240196]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLVQTDCQVPQMPSENTKLLDLVDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQARIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=47994 NMBM04240196_RS02310 WP_014581352.1 420814..422310(+) (comM) [Neisseria meningitidis M04-240196]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCACATTTCAACATCGTCGGACTGCCCGATACGGAAGTCAAAGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGTGCAAACCGACTGTCAAGTTCCTCAGATGCCGTCTGAAAA
CACCAAATTGCTCGACCTCGTCGATGTCAAGGGTCAGCACACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTTGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAGCAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCGGATCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGTGTTTTGTTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAACTTGTCGCCGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AGATTTCCGGCCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGCGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCCCGCGACAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCCGCATCCAAAAAGAAGCGCAGGAAGCATTGGGCAGCCTGC
TGGAAAAACTCTCCCTCTCCGCCCGCAGTTTCCACCGCATCATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGCCGCGCTTTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.314

99.799

0.522
  comM Haemophilus influenzae Rd KW20

49.699

100

0.498
  comM Glaesserella parasuis strain SC1401

49.203

100

0.496
  comM Legionella pneumophila str. Paris

46.575

100

0.478
  comM Legionella pneumophila strain ERS1305867

46.575

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

100

0.434

Multiple sequence alignment