Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   H4B46_RS07300 Genome accession   NZ_CP060504
Coordinates   1555364..1556104 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain AbCTX9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550364..1561104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B46_RS07285 (H4B46_07270) ponA 1550951..1553506 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  H4B46_RS07290 (H4B46_07275) pilM 1553668..1554726 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  H4B46_RS07295 (H4B46_07280) pilN 1554726..1555367 (+) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  H4B46_RS07300 (H4B46_07285) pilO 1555364..1556104 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H4B46_RS07305 (H4B46_07290) pilP 1556115..1556642 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  H4B46_RS07310 (H4B46_07295) pilQ 1556705..1558870 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H4B46_RS07315 (H4B46_07300) aroK 1558882..1559451 (+) 570 WP_000643712.1 shikimate kinase AroK -
  H4B46_RS07320 (H4B46_07305) aroB 1559480..1560562 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=476387 H4B46_RS07300 WP_000076101.1 1555364..1556104(+) (pilO) [Acinetobacter baumannii strain AbCTX9]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=476387 H4B46_RS07300 WP_000076101.1 1555364..1556104(+) (pilO) [Acinetobacter baumannii strain AbCTX9]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683