Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H2785_RS01440 Genome accession   NZ_CP059546
Coordinates   310337..310978 (+) Length   213 a.a.
NCBI ID   WP_223069827.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10_4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305337..315978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS01420 (H2785_01420) - 305385..305717 (+) 333 WP_000169599.1 hypothetical protein -
  H2785_RS01425 (H2785_01425) - 305720..306544 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  H2785_RS01430 (H2785_01430) ponA 306562..309117 (-) 2556 WP_223069825.1 penicillin-binding protein 1A -
  H2785_RS01435 (H2785_01435) pilM 309279..310337 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H2785_RS01440 (H2785_01440) pilN 310337..310978 (+) 642 WP_223069827.1 PilN domain-containing protein Machinery gene
  H2785_RS01445 (H2785_01445) pilO 310975..311715 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2785_RS01450 (H2785_01450) pilP 311726..312253 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H2785_RS01455 (H2785_01455) pilQ 312316..314481 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H2785_RS01460 (H2785_01460) aroK 314493..315062 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24000.35 Da        Isoelectric Point: 5.1365

>NTDB_id=470337 H2785_RS01440 WP_223069827.1 310337..310978(+) (pilN) [Acinetobacter baumannii strain 10_4]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLDGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=470337 H2785_RS01440 WP_223069827.1 310337..310978(+) (pilN) [Acinetobacter baumannii strain 10_4]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAGACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709