Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H2R00_RS15070 Genome accession   NZ_CP059494
Coordinates   3037692..3038804 (-) Length   370 a.a.
NCBI ID   WP_154996117.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3032692..3043804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS15055 gyrA 3032794..3035268 (-) 2475 WP_154996121.1 DNA gyrase subunit A -
  H2R00_RS15060 gyrB 3035459..3037372 (-) 1914 WP_154996125.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  H2R00_RS15065 - 3037432..3037674 (-) 243 WP_154996119.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  H2R00_RS15070 recF 3037692..3038804 (-) 1113 WP_154996117.1 DNA replication/repair protein RecF Machinery gene
  H2R00_RS15075 yaaA 3038821..3039036 (-) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  H2R00_RS15080 dnaN 3039204..3040340 (-) 1137 WP_026580417.1 DNA polymerase III subunit beta -
  H2R00_RS15085 dnaA 3040518..3041858 (-) 1341 WP_009330034.1 chromosomal replication initiator protein DnaA -
  H2R00_RS15090 rpmH 3042498..3042632 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  H2R00_RS15095 rnpA 3042717..3043076 (+) 360 WP_020453656.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42496.36 Da        Isoelectric Point: 6.7332

>NTDB_id=470078 H2R00_RS15070 WP_154996117.1 3037692..3038804(-) (recF) [Bacillus haynesii strain P19]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVEQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=470078 H2R00_RS15070 WP_154996117.1 3037692..3038804(-) (recF) [Bacillus haynesii strain P19]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAATGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCC
GTTCCCATCCAGCTTGTTATTTCCAAAAAAGGAAAAAAAGGTAAAGTTAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTTTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAGACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGAACAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGAGTATCTCTTTCAGGTCCCCATAG
GGATGATGTTCTTTTCTACGTCAATGGCCGTGATGTACAGACTTACGGATCGCAGGGCCAGCAGCGTACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACACTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886